Update cwltool-runcrate version of the predict pipeline crate

[simleo]

This version is generated with the latest versions of cwltool and runcrate.

• adds README.md
• adds sha1 to files, alternateName to files and directories
• packed.cwl#main/slide now maps to the input Collection (rather than its main file)
• adds profile conformance statements to the root dataset:

{
    "@id": "./",
    "@type": "Dataset",
    "conformsTo": [
        {"@id": "https://w3id.org/ro/wfrun/process/0.1"},
        {"@id": "https://w3id.org/ro/wfrun/workflow/0.1"},
        {"@id": "https://w3id.org/ro/wfrun/provenance/0.1"},
        {"@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0"}
    ],
    ...
},
{
    "@id": "https://w3id.org/ro/wfrun/process/0.1",
    "@type": "CreativeWork",
    "name": "Process Run Crate",
    "version": "0.1"
},
{
    "@id": "https://w3id.org/ro/wfrun/workflow/0.1",
    "@type": "CreativeWork",
    "name": "Workflow Run Crate",
    "version": "0.1"
},
{
    "@id": "https://w3id.org/ro/wfrun/provenance/0.1",
    "@type": "CreativeWork",
    "name": "Provenance Run Crate",
    "version": "0.1"
},
{
    "@id": "https://w3id.org/workflowhub/workflow-ro-crate/1.0",
    "@type": "CreativeWork",
    "name": "Workflow RO-Crate",
    "version": "1.0"
},