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ResearchSoftwareInstitute / greendatatranslator

Green Team Data Translator Software Engineering and Development
BSD 3-Clause "New" or "Revised" License
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Prototype the Orange Biocluster API #110

Closed stevencox closed 6 years ago

stevencox commented 6 years ago

Develop a prototype biocluster API using smartBag. Review with Marcin of Orange team to assess viability of the approach.

See this issue: https://github.com/NCATS-Tangerine/smartBag/issues/2

tubafrenzy commented 6 years ago

Currently getting my feet wet with smartBag and am working on the prototype using the first 20 rows that Marcin emailed us.

tubafrenzy commented 6 years ago

Made a first pass at what the bicluster JSON-LD file might look like in order to best represent the sample data that Marcin emailed us. So now I am tweaking the example smart bag script to turn this JSON-LD + sample data into a queryable API.

tubafrenzy commented 6 years ago

This is mostly complete, there is a separate smartBag/example/bicluster directory that has everything necessary to turn the CSV file into a bicluster API. Steve helped me get the bicluster app deployed on Mesos, so now we just need to configure the DNS + nginx to expose it over HTTP.

stevencox commented 6 years ago

Prototype endpoint here Discussion with Orange about next steps ongoing. Future work will be tracked beyond this prototype issue.