Generate a shell for the ICEES Pipeline

ResearchSoftwareInstitute / greendatatranslator

Green Team Data Translator Software Engineering and Development

BSD 3-Clause "New" or "Revised" License

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Generate a shell for the ICEES Pipeline #138

Open stevencox opened 6 years ago

stevencox commented 6 years ago

Create a shell program for managing the DDCR pipeline as a product.

It should include a technical README documenting dependencies, installation requirements, and command line options for a single tool (eg. ddcr) for exporting i2b2 to fhir, validating inputs, executing the pipline, etc.

Please create a GitHub repo for all DDCR related artifacts. Tangerine would be a reasonable place if one does not already exist.

Should incorporate results of #136 and #137

stevencox commented 6 years ago

A directory structure along these lines would be good:

|--README.md - Document outlining the pipeline's purpose and usage.
|--api - materials relating to the OpenAPI spec and implementation.
|--pipeline
   |--clinical - code for converting i2b2 to FHIR
   |--environmental - code for joining CMAQ data.
   |--socio
      |--row - joining roadway data, school data
      |--census - joining household income, education level, other ACS data

@jameschump @empfff @karafecho

xu-hao commented 6 years ago

Dependencies:

@jameschump, you are looking into developing a tool for converting h2b2 to fihr. Is that correct?

jameschump commented 6 years ago

Yes, that is correct.

xu-hao commented 6 years ago

@jameschump, could you give us an ETA @stevencox