Expanding BiCluster API with 'aggregation of row data'

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Green Team Data Translator Software Engineering and Development

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Expanding BiCluster API with 'aggregation of row data' #161

Closed colinkcurtis closed 5 years ago

colinkcurtis commented 5 years ago

Working with Marcin Joachimiak to expand the functionality at https://bicluster.renci.org/apidocs/

Currently in discussion mode on Slack.

colinkcurtis commented 5 years ago

We've set out a plan for, and coded the first working portion of, a "gene/tissue co-occurrence" processor which utilizes bicluster API, FA_1_core_complex, and FA_4_all_genes files

karafecho commented 5 years ago

@ColinKCurtis @stevencox : Please keep Green Team posted on this. Marcin J. joined last Friday's mini-hackathon on WF5 and is anxious to get involved with our efforts.

colinkcurtis commented 5 years ago

Marcin J. is now in touch with Steve Cox and Chris Bizon.
There is a repository of notebooks, found here: Workflow 9 - Bicluster Notebooks Within these notebooks, currently the "gene_to_gene..." and "tissue_to_tissue..." are in good condition for evaluation. The other two, "gene_to_tissue..." and "tissue_to_gene...", will require some code work in "biclusterco.py" to behave properly.