Onto API shift to UberGraph

[colinkcurtis]

Currently, Onto API loads the seven relevant obo files (hp, uberon, cl, chebi, mondo, go, ro) behind the scenes and serves them through a set of python functions and a Flask application at onto.renci.org/apidocs

Based on conversation with Jim Balhoff and Chris Bizon:

• BROADLY: Create an interface from UberGraph to UberOnto API to replace and improve upon the current Onto API.

SPECIFICALLY:

• [x] Accept input to UberOnto API in current Onto API input format
• [x] Convert input to SPARQL query
• [x] Transmit SPARQL query to UberonGraph (UG)
• [x] re-format results from UG?
• [x] Serve formatted results at UberOnto API

[colinkcurtis]

UPDATE: Access this service at https://uberonto.renci.org/apidocs !

• /descendants (~7200x faster for GO:0005575 query!)
• /id_list
• /label
• /children

TO DO:

• [x] get the reverse proxy set up for uberonto.renci.org/apidocs
• [ ] all_properties
• [ ] closeMatch
• [ ] exactMatch
• [ ] is_a
• [ ] lookup (?)
• [ ] parents
• [ ] search
• [ ] siblings
• [ ] synonyms
• [ ] xrefs