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ResearchSoftwareInstitute / greendatatranslator

Green Team Data Translator Software Engineering and Development
BSD 3-Clause "New" or "Revised" License
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Query Biopsy: High-level Query to Data Sources/Elements to Technical Approach #52

Closed karafecho closed 6 years ago

karafecho commented 7 years ago

This issue involves the dissection of the demonstration use case queries from high-level text to requisite data sources/elements to technical approach for execution in GitHub.

karafecho commented 7 years ago

Steve, Jim, and Kara to begin populating the Orange Team's 'Tangerine' GitHub site (https://github.com/NCATS-Tangerine/cq-notebooks/) with Green Team folders for each of our queries. Specifically, Kara to create readme files from the queries in the GreenTeamQueriesToTechnicalApproach spreadsheet; Steve and Jim to create Jupyter notebooks.

karafecho commented 7 years ago

Green Team folders were created on Tangerine GitHub site. Readme files were added for all five queries; Jupyter notebooks were created for queries 1, 2, 3, and 4 and are in active development.

karafecho commented 6 years ago

Kara, Kimberly, and Alex met to discuss endotyping, in general, and GT's queries, specifically. In related work, proposed definitions of phenotype and endotype and documentation on GT's approach to endotyping were distributed to OT, Endotype Process Interest Group, and NCATS.

karafecho commented 6 years ago

See #75

karafecho commented 6 years ago

Promising preliminary results obtained for CQ1(a) using real patient data integrated at patient level with PM2.5 exposures data. Preliminary results were presented at the hackathon.

stevencox commented 6 years ago

This activity has morphed in a variety of ways. We have a Query and Interface themed Translator call. We have deep dive biopsies on the Reasoner and Inference thread. Let's discuss disposition of this issue. @karafecho @cbizon