October Hackathon Prep

[KCB13]

October Hackathon Grocery List:

• Knowledge Sources - The Green APIs
  • [x] Chemo-Bio KS SPARQL chem2bio2rdf endpoint @stevencox
  • [ ] Clinical Data KS @empfff @jameschump see #70
  • [x] #77 Process for access to real patient data (new network architecture)
    • [x] @rayi113 and @stevencox to meet with Jan Werner, @jameschump , @xu-hao
  • [ ] #90 API Security architecture prototype
    • [x] Interview and hire contractor
    • [ ] Configure Shibboleth SP
    • [x] Prototype Jupyter notebook(alpha). NCATS-Tangerine/saml
  • [x] Environmental Exposures KS @lstillwe @mjstealey @hyi @arunacs @ahannaIE see #87 #86 #20 #6
  • [x] New repository RENCI/nih-exposures-api
  • [x] ~Mock~ running at proxied public inerface https://exposures.renci.org/v1/ui/#/default
  • [x] Endotypes KS @krobasky @stevencox @hyi @karafecho see #52 #75
  • [x] Mock running at https://endotypes.renci.org/v1/ui/
  • [x] New repository RENCI/nih-endotypes-api
  • [x] Integrated system invoked from notebook to OpenAPI interface to R model.
  • [x] Chemotext KS (Eshelman / Tropsha Group's Medline derived graph database)
• API Federation Integrate all Green KSes into Blackboard (CQ notebooks + Reasoner)
  • [x] GitHub Repo [NCATS-Tangerine/greent] (https://github.com/NCATS-Tangerine/greent)
  • [ ] Integrate each from Jupyter to data.
  • [x] ChemBio KS integrated
  • [x] Patient KS integrated
  • [x] Exposure KS integrated
  • [x] Endotype KS integrated
• Miscellaneous Tech Aims

  • 84 dependency on @arunacs @ahannaIE

  • Hong Yi -Python NLP libraries for hackathon
  • Execute a query @empfff @karafecho @krobasky
  • Capture and analyze team science activities @hyi
• Project Management @rayi113 @davissn30 @kcb13
  • [x] Form Hackathon groups
  • [x] Initial Hackathon group call
  • [x] Agenda/Structure of Hackathon
  • [ ] Hackathon Survey

[hyi]

@KCB13 I believe I am wrongly assigned for Endotypes service in the list above. It should be most likely assigned to @balhoff and/or @jameschump

[stevencox]

Hi @KCB13 and @rayi113. Please have a look at the outline above and let me know if you see problems.

[stevencox]

77 - meeting set up for Thursday to set a path for this.

75 - preliminary integration of endotype API. Thanks for the extra effort, @hyi

[stevencox]

Hackathon completed.