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RevolutionAnalytics / RHadoop

RHadoop
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library(rmr2) ;do mapreduce(input = small.ints, map = function(k, v) cbind(v, v^2)) come in following question #223

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searchlink commented 9 years ago

Error: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:425) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:341) at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:162) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:415) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1491) at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:157) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 9 more Caused by: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapRunner.configure(MapRunner.java:38) ... 14 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 17 more Caused by: java.lang.RuntimeException: configuration exception at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:222) at org.apache.hadoop.streaming.PipeMapper.configure(PipeMapper.java:66) ... 22 more Caused by: java.io.IOException: Cannot run program "Rscript": error=2, No such file or directory at java.lang.ProcessBuilder.start(ProcessBuilder.java:1041) at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:209) ... 23 more Caused by: java.io.IOException: error=2, No such file or directory at java.lang.UNIXProcess.forkAndExec(Native Method) at java.lang.UNIXProcess.(UNIXProcess.java:186) at java.lang.ProcessImpl.start(ProcessImpl.java:130) at java.lang.ProcessBuilder.start(ProcessBuilder.java:1022) ... 24 more

15/03/26 21:46:51 INFO mapreduce.Job: Task Id : attempt_1427418278269_0006_m_000001_0, Status : FAILED Error: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:425) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:341) at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:162) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:415) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1491) at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:157) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 9 more Caused by: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapRunner.configure(MapRunner.java:38) ... 14 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 17 more Caused by: java.lang.RuntimeException: configuration exception at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:222) at org.apache.hadoop.streaming.PipeMapper.configure(PipeMapper.java:66) ... 22 more Caused by: java.io.IOException: Cannot run program "Rscript": error=2, No such file or directory at java.lang.ProcessBuilder.start(ProcessBuilder.java:1041) at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:209) ... 23 more Caused by: java.io.IOException: error=2, No such file or directory at java.lang.UNIXProcess.forkAndExec(Native Method) at java.lang.UNIXProcess.(UNIXProcess.java:186) at java.lang.ProcessImpl.start(ProcessImpl.java:130) at java.lang.ProcessBuilder.start(ProcessBuilder.java:1022) ... 24 more

15/03/26 21:46:55 INFO mapreduce.Job: Task Id : attempt_1427418278269_0006_m_000000_1, Status : FAILED Error: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:425) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:341) at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:162) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:415) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1491) at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:157) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 9 more Caused by: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapRunner.configure(MapRunner.java:38) ... 14 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 17 more Caused by: java.lang.RuntimeException: configuration exception at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:222) at org.apache.hadoop.streaming.PipeMapper.configure(PipeMapper.java:66) ... 22 more Caused by: java.io.IOException: Cannot run program "Rscript": error=2, No such file or directory at java.lang.ProcessBuilder.start(ProcessBuilder.java:1041) at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:209) ... 23 more Caused by: java.io.IOException: error=2, No such file or directory at java.lang.UNIXProcess.forkAndExec(Native Method) at java.lang.UNIXProcess.(UNIXProcess.java:186) at java.lang.ProcessImpl.start(ProcessImpl.java:130) at java.lang.ProcessBuilder.start(ProcessBuilder.java:1022) ... 24 more

15/03/26 21:46:55 INFO mapreduce.Job: Task Id : attempt_1427418278269_0006_m_000001_1, Status : FAILED Error: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:425) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:341) at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:162) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:415) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1491) at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:157) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 9 more Caused by: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapRunner.configure(MapRunner.java:38) ... 14 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 17 more Caused by: java.lang.RuntimeException: configuration exception at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:222) at org.apache.hadoop.streaming.PipeMapper.configure(PipeMapper.java:66) ... 22 more Caused by: java.io.IOException: Cannot run program "Rscript": error=2, No such file or directory at java.lang.ProcessBuilder.start(ProcessBuilder.java:1041) at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:209) ... 23 more Caused by: java.io.IOException: error=2, No such file or directory at java.lang.UNIXProcess.forkAndExec(Native Method) at java.lang.UNIXProcess.(UNIXProcess.java:186) at java.lang.ProcessImpl.start(ProcessImpl.java:130) at java.lang.ProcessBuilder.start(ProcessBuilder.java:1022) ... 24 more

15/03/26 21:47:00 INFO mapreduce.Job: Task Id : attempt_1427418278269_0006_m_000001_2, Status : FAILED Error: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:425) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:341) at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:162) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:415) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1491) at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:157) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 9 more Caused by: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapRunner.configure(MapRunner.java:38) ... 14 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 17 more Caused by: java.lang.RuntimeException: configuration exception at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:222) at org.apache.hadoop.streaming.PipeMapper.configure(PipeMapper.java:66) ... 22 more Caused by: java.io.IOException: Cannot run program "Rscript": error=2, No such file or directory at java.lang.ProcessBuilder.start(ProcessBuilder.java:1041) at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:209) ... 23 more Caused by: java.io.IOException: error=2, No such file or directory at java.lang.UNIXProcess.forkAndExec(Native Method) at java.lang.UNIXProcess.(UNIXProcess.java:186) at java.lang.ProcessImpl.start(ProcessImpl.java:130) at java.lang.ProcessBuilder.start(ProcessBuilder.java:1022) ... 24 more

15/03/26 21:47:00 INFO mapreduce.Job: Task Id : attempt_1427418278269_0006_m_000000_2, Status : FAILED Error: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:425) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:341) at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:162) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:415) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1491) at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:157) Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 9 more Caused by: java.lang.RuntimeException: Error in configuring object at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:109) at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:75) at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) at org.apache.hadoop.mapred.MapRunner.configure(MapRunner.java:38) ... 14 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.apache.hadoop.util.ReflectionUtils.setJobConf(ReflectionUtils.java:106) ... 17 more Caused by: java.lang.RuntimeException: configuration exception at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:222) at org.apache.hadoop.streaming.PipeMapper.configure(PipeMapper.java:66) ... 22 more Caused by: java.io.IOException: Cannot run program "Rscript": error=2, No such file or directory at java.lang.ProcessBuilder.start(ProcessBuilder.java:1041) at org.apache.hadoop.streaming.PipeMapRed.configure(PipeMapRed.java:209) ... 23 more Caused by: java.io.IOException: error=2, No such file or directory at java.lang.UNIXProcess.forkAndExec(Native Method) at java.lang.UNIXProcess.(UNIXProcess.java:186) at java.lang.ProcessImpl.start(ProcessImpl.java:130) at java.lang.ProcessBuilder.start(ProcessBuilder.java:1022) ... 24 more

15/03/26 21:47:05 INFO mapreduce.Job: map 100% reduce 0% 15/03/26 21:47:05 INFO mapreduce.Job: Job job_1427418278269_0006 failed with state FAILED due to: Task failed task_1427418278269_0006_m_000000 Job failed as tasks failed. failedMaps:1 failedReduces:0

15/03/26 21:47:05 INFO mapreduce.Job: Counters: 10 Job Counters Failed map tasks=7 Killed map tasks=1 Launched map tasks=8 Other local map tasks=6 Data-local map tasks=2 Total time spent by all maps in occupied slots (ms)=24783 Total time spent by all reduces in occupied slots (ms)=0 Map-Reduce Framework CPU time spent (ms)=0 Physical memory (bytes) snapshot=0 Virtual memory (bytes) snapshot=0 15/03/26 21:47:05 ERROR streaming.StreamJob: Job not Successful! Streaming Command Failed! Error in mr(map = map, reduce = reduce, combine = combine, vectorized.reduce, : hadoop streaming failed with error code 1