RF02360 mismatching seed regions

Rfam / rfam-family-pipeline

Backend for the Rfam family building pipeline

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RF02360 mismatching seed regions #34

Open kalvari opened 5 years ago

kalvari commented 5 years ago

The regions in the SEED alignment (start-end positions) do not match the ones in the seed_region table. Due to this the sequences cannot be extracted from the seed_alignment.

We need to:

[x] Resolve the inconsistency
[x] Generate seed region md5s for this family
[ ] Update the fasta file on the ftp

kalvari commented 5 years ago

Based on SVN logs, the start and end positions in seed_region table are those from the first commit, although the SEED alignment on the SVN is the updated version, re-thresholded for Rfam 12.0 (ruthe & swd commits). We need to try and commit the family once again and make sure that the regions are the correct ones.