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Rfam / rfam-website

Rfam website source code
https://rfam.org
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Sort entries by number of 3D structures #35

Open nancyontiveros opened 4 years ago

nancyontiveros commented 4 years ago

Trying to list all the Rfam families that have pseudoknots and 3D structures, but at the moment it is not possible to sort by the # of 3D structures and would be very useful.

Blame @kalvari

ankitskvmdam commented 3 years ago

Hey, is anyone working on this issue?

ankitskvmdam commented 3 years ago

I was looking into the source code and managed to create a working patch to enable sorting by the # of 3D structures. I was wondering, it would be nice to have more sorting parameters like: num_seed, num_species, ... when search_type='all'

nancyontiveros commented 3 years ago

Hello Ankit Kumar,

Thank you for your interest in the parameters for sorting the information in Rfam.

We appreciated very much the suggestions for Rfam and we will take this into consideration for future developments in the database.

Also if you are interested in sharing the patch that you develop, please feel free to share it with us.

Best wishes,

Nancy Ontiveros

On 12 Apr 2021, at 10:22, Ankit Kumar (अंकित कुमार) @.***> wrote:

I was looking into the source code and managed to create a working patch to enable sorting by the # of 3D structures. I was wondering, it would be nice to have more sorting parameters like: num_seed, num_species, ... when search_type='all'

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AntonPetrov commented 3 years ago

@ankitskvmdam Thanks a lot for the PR! I will take a look and get back to you.

Also well done navigating the Rfam codebase! 👏