installation error

[lizhaozhi]

Hi, I tried to install Rfast. But got the following errors:

---

install.packages("Rfast")

There is a binary version available but the source version is later: binary source needs_compilation Rfast 2.0.0 2.0.1 TRUE

Do you want to install from sources the package which needs compilation? (Yes/no/cancel) Yes installing the source package ‘Rfast’

trying URL 'https://cran.rstudio.com/src/contrib/Rfast_2.0.1.tar.gz' Content type 'application/x-gzip' length 313781 bytes (306 KB)

downloaded 306 KB

• installing source package ‘Rfast’ ... package ‘Rfast’ successfully unpacked and MD5 sums checked using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/opt/gettext/include -I/usr/local/opt/llvm/include -I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include -fPIC -Wall -g -O2 -c Diag.cpp -o Diag.o In file included from Diag.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/RcppCommon.h:29: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/r/headers.h:67: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:100: /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:314:9: error: no member named 'signbit' in the global namespace using ::signbit; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:315:9: error: no member named 'fpclassify' in the global namespace using ::fpclassify; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:316:9: error: no member named 'isfinite' in the global namespace; did you mean 'finite'? using ::isfinite; ~~^ /usr/local/include/math.h:749:12: note: 'finite' declared here extern int finite(double) ^ In file included from Diag.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/RcppCommon.h:29: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/r/headers.h:67: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:100: /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:317:9: error: no member named 'isinf' in the global namespace using ::isinf; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:318:9: error: no member named 'isnan' in the global namespace using ::isnan; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:319:9: error: no member named 'isnormal' in the global namespace using ::isnormal; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:320:9: error: no member named 'isgreater' in the global namespace using ::isgreater; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:321:9: error: no member named 'isgreaterequal' in the global namespace using ::isgreaterequal; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:322:9: error: no member named 'isless' in the global namespace using ::isless; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:323:9: error: no member named 'islessequal' in the global namespace using ::islessequal; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:324:9: error: no member named 'islessgreater' in the global namespace using ::islessgreater; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:325:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:326:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:332:9: error: no member named 'abs' in the global namespace; did you mean 'fabs'? using ::abs; ~~^ /usr/local/include/math.h:417:15: note: 'fabs' declared here extern double fabs(double); ^ In file included from Diag.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/RcppCommon.h:29: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/r/headers.h:67: In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:100: /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:552:28: error: expected a qualified name after 'typename' _LIBCPP_CONSTEXPR typename enable_if<is_floating_point<_A1>::value, bool>::type ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:552:37: error: expected ';' at end of declaration _LIBCPP_CONSTEXPR typename enable_if<is_floating_point<_A1>::value, bool>::type ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:552:37: error: expected unqualified-id /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:564:39: error: use of undeclared identifier 'is_floating_point' _LIBCPP_CONSTEXPR typename enable_if<!is_floating_point<_A1>::value, bool>::type ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:564:57: error: '_A1' does not refer to a value _LIBCPP_CONSTEXPR typename enable_if<!is_floating_point<_A1>::value, bool>::type ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:562:17: note: declared here template ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [Diag.o] Error 1 ERROR: compilation failed for package ‘Rfast’
• removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rfast’ Warning in install.packages : installation of package ‘Rfast’ had non-zero exit status

The downloaded source packages are in ‘/private/var/folders/_3/_hmmdm0d3b94hb2s2r7t37c00000gn/T/RtmpIxRVGh/downloaded_packages’

[ManosPapadakis95]

Can you give me the details of your system? Also why don't you wait 2 days until the compiled version is upload?

[lizhaozhi]

Can you give me the details of your system? Also why don't you wait 2 days until the compiled version is upload?

Thanks. I solved this problem by updating ~/.R/Makevars