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RfastOfficial / Rfast2

A collection of Rfast2 functions for data analysis. Note 1: The vast majority of the functions accept matrices only, not data.frames. Note 2: Do not have matrices or vectors with have missing data (i.e NAs). We do no check about them and C++ internally transforms them into zeros (0), so you may get wrong results. Note 3: In general, make sure you give the correct input, in order to get the correct output. We do no checks and this is one of the many reasons we are fast.
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Installation failed due to file not found issue with #include <execution> #26

Closed Patrikios closed 8 months ago

Patrikios commented 11 months ago

Problematic error message:

* installing *source* package ‘Rfast2’ ...
** Paket ‘Rfast2’ erfolgreich entpackt und MD5 Summen überprüft
** using staged installation
** libs
using C compiler: ‘gcc (Debian 8.3.0-6) 8.3.0’
using C++ compiler: ‘g++ (Debian 8.3.0-6) 8.3.0’
using C++17
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppArmadillo/include' -I'/usr/lib/R/site-library/RcppParallel/include'    -fopenmp -fpic  -g -O2 -fdebug-prefix-map=/home/jranke/git/r-backports/buster/r-base-4.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c Eval.cpp -o Eval.o
In file included from ../inst/include/Rfast2/templates.h:10,
                 from Eval.cpp:7:
../inst/include/Rfast2/parallel.h:20:10: fatal error: execution: Datei oder Verzeichnis nicht gefunden
 #include <execution>
          ^~~~~~~~~~~
compilation terminated.
make: *** [/usr/lib/R/etc/Makeconf:200: Eval.o] Fehler 1
ERROR: compilation failed for package ‘Rfast2’
* removing ‘/usr/lib/R/site-library/Rfast2’
* restoring previous ‘/usr/lib/R/site-library/Rfast2’
> sessionInfo()
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 10 (buster)

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 
LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.3.5.so;  LAPACK version 3.8.0

locale:
 [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C               LC_TIME=de_DE.UTF-8       
 [4] LC_COLLATE=de_DE.UTF-8     LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=de_DE.UTF-8   
 [7] LC_PAPER=de_DE.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C       

time zone: Europe/Berlin
tzcode source: system (glibc)

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_4.3.2 tools_4.3.2
ruizederick commented 11 months ago

Hi,

I was having the same problem. The compiler your using (g++ version 8.3) doesn't support \<execution> library, you should use g++ version 9 or higher.