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RichardFav / spikeGUI

Electrophysiology Analysis GUI Repository
MIT License
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update HD and HD modulated definitions #6

Closed Sepidak closed 4 years ago

Sepidak commented 4 years ago

HD cells under both light 1 and light2 must have: 1-mean_vec_length >= 0.2 2-rayleight_tes_p < 0.001

HD modulated cells under both light 1 and light2 must have: 1- 0.1 < mean_vec_length < 0.2 2-rayleight_tes_p < 0.001

RichardFav commented 4 years ago

Have added these new definitions to the project and will test on Subiculum.

Sepidak commented 4 years ago

ok thanks! are these hard-coded? If yes then it's best that you tell me where they are in the code incase I need to change the thresholds again.

RichardFav commented 4 years ago

Yes they are. They are located in "main_analysis.py" in the "append_data" function for the FreelyMovingData class (to find it just do a search for "_def append_data(self, data, fdata)" in main_analysis.py). I've added comment to the parameters so you know what each does.

Sepidak commented 4 years ago

note I have change these two parameters: p_rayleight_hd is changed from 0.001 to 0.01 p_rayleight_hd_mod is changed from 0.001 to 0.01