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RichardHooijmaijers / shinyMixR

run management tool for nlmixr
https://richardhooijmaijers.github.io/shinyMixR/index.html
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shinyMixR failed in Win 10 #7

Closed mattfidler closed 4 years ago

mattfidler commented 5 years ago

https://github.com/nlmixrdevelopment/nlmixr/issues/129 When I tried to run 'run1', I got this error msg. Is there ways to fix this?

**C:/Users/User/Documents/shinyMixR/temp/run1.prog.txt** Loading required package: nlme Loading required package: RxODE Error: unexpected '}' in: " data_nlm <- }" Execution halted

RichardHooijmaijers commented 5 years ago

Is it possible to share a bit more information? I would like to know the version of R and the package versions for nlmixr/RxODE/shinyMixR. Furthermore it would help if the model and dataset can be shared. This will make it a lot easier to pinpoint the problem :)

sliao99 commented 5 years ago

[64-bit] C:\Program Files\R\R-3.5.2' The shinyMixR is the most recent one and the instruction dated 2018-04-06. I tried the run1 without any changes from the package.

sliao99 commented 5 years ago

I just tried to follow the instruction to install the package and run the example in the instruction.

RichardHooijmaijers commented 5 years ago

It looks like something went wrong with the installation of one of the packages. The easiest way to test this and to pinpoint the exact problem is to run the installation test:

https://raw.githubusercontent.com/nlmixrdevelopment/nlmixr/master/build/test_install.R

Could you run this and report back the results?

sliao99 commented 5 years ago

error.txt

I run the test_install.R and I got one error shown below:

Correct R version: Yes, R version 3.5.2 (2018-12-20) RxODE installed: Yes Python installed: Yes, Python 3.7.1 sympy installed: Yes devtools package installed: Yes Error : 'find_rtools' is not an exported object from 'namespace:devtools'

RichardHooijmaijers commented 5 years ago

It seems that you are missing Rtools which is necessary to be able to work with nlmixr. On the github page of nlmixr there are instructions on how to install this: https://github.com/nlmixrdevelopment/nlmixr Perhaps it is necessary to reinstall the R packages afterwards. You can check if the installation was successful by rerunning the test_install script

mattfidler commented 5 years ago

@sliao99 can you try the install script again?

Devtools no longer exports find_rtools so I updated the install check script.