search

RitchieLab / LOKI

0 stars 0 forks source link

build 37 LOKI #16

Open katiecardone26 opened 1 month ago

katiecardone26 commented 1 month ago

Is your feature request related to a problem? Please describe. Biofilter is compatible with both b37 and b38 genomes. However, the b37 version of LOKI on the LPC is from 2014, whereas the b38 version is from 2022. I think there should be a more up to date version of b37 LOKI.

Describe the solution you'd like I think there should be a more up to date b37 version of LOKI. I think this could be achieved by using liftover to convert the b38 version to b37.

AndreRico commented 1 month ago

Hi @katiecardone26 , would you like to discuss this point in our next topic meeting? We would implement it in version 2.4.3?

katiecardone26 commented 4 weeks ago

I think it would be helpful to implement in version 2.4.3, because I believe b37 annotations can be queried with the existing databases. I don't think I am on the biofilter/loki project meetings but feel free to bring up this point at the next meeting.