RitchieLabIGH / IRFinder

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Differential IR Analysis With Replicates #41

Closed adi8897 closed 8 months ago

adi8897 commented 9 months ago

im tryng to do this and everyti,e I try to run it on the cluster I worked with I get error DESeq2 is not installed but I did installed it on my R and I mentioned the path to other I'm not sure what to do I would like for some help please. <82|0>adi8897@moriah-gw-02:~/adi8897/IR_finder_venv/IRFinder-2.0-beta/bin% ./IRFinderDiff -m deseq -g:Control /sci/labs/maayan.salton/adi8897/master_project/WBP4/new_IR_finder/SRR9600556/IRFinder-IR-nondir.txt /sci/labs/maayan.salton/adi8897/master_project/WBP4/new_IR_finder/SRR9600557/IRFinder-IR-nondir.txt /sci/labs/maayan.salton/adi8897/master_project/WBP4/new_IR_finder/SRR9600558/IRFinder-IR-nondir.txt /sci/labs/maayan.salton/adi8897/master_project/WBP4/new_IR_finder/SRR9600559/IRFinder-IR-nondir.txt -g:WBP4 /sci/labs/maayan.salton/adi8897/master_project/WBP4/new_IR_finder/WBP--estonain/IRFinder-IR-nondir.txt /sci/labs/maayan.salton/adi8897/master_project/WBP4/new_IR_finder/WBP--israeli/IRFinder-IR-nondir.txt -o /sci/labs/maayan.salton/adi8897/master_project/WBP4/new_IR_finder/diff_output DESeq2 not installed.

i, not sure what I, doing wrong and I don't know how to use this correctly