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RitchieLabIGH / IRFinder

MIT License
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Unable to load DESeq2 under singularity #8

Closed glarue closed 2 years ago

glarue commented 2 years ago

I'm trying to run IRFinder Diff on Linux using singularity run, but it looks like it's sourcing the system-level R installation (from log.err):

Error: package or namespace load failed for 'DESeq2' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/glarue/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/libs/Rcpp.so':
  /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by /home/glarue/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/libs/Rcpp.so)
Execution halted

I've tried running singularity with the --cleanenv flag, but it produces the same error. Any pointers would be appreciated!

CloXD commented 2 years ago

Hello, sorry for the late answer. I'm fixing the problem and will be soon available with the new release ( v2.0.1 ). Cheers, Claudio