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RivuletStudio / rivuletpy

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
BSD 3-Clause "New" or "Revised" License
66 stars 16 forks source link

Missing module simpleitk Suggestion: edit instalation instructions #10

Closed Leandroscholz closed 6 years ago

Leandroscholz commented 6 years ago

Hi, I would like to give a suggestion. It is probably necessary to add in the installation instructions additional information to install simpleitk module. I run Ubuntu 18.04 Anaconda (command line client - 1.16.14).

in my case, simple itk could not be added by simply running the command

$ conda install simpleitk anaconda

After installing and running rtrace an error message appeared: 

ImportError: No module named 'SimpleITK'

I had to use the command below instead

$ conda install -c simpleitk simpleitk

After that, I was able to succefully run rtrace. I hope this suggestion is useful to others.

lsqshr commented 6 years ago

Hey @Leandroscholz , thank you so much for pointing this out! Just added a line there in the readme.

Leandroscholz commented 6 years ago

Thanks for the reply! btw, good work with Rivulet2! I'm testing it on some images 😄

Cheers.