Closed gecko1990 closed 2 years ago
it seems like your files don't have the correct format. I see empty "cluster IDs" in some rows, also some rows contain long reference names with assigned taxonomy, whereas the majority contains the short name (ref_). In cluster_score, the "score" is meant to be a number and not a string. Also, this is optional
For the record:
It seems like the error comes from some reference sequences being labelled with integers, gappa examine assign cannot tell the difference between these sequences and the bootstrap value of internal nodes (which acts a default label in newick).
Opening issue #68 to solve this...
Hi...
closing this issue since the error source was identified and solved in issue #68
Hi, I am trying to apply labelplacement on my amt tree but I keep getting an error related to gappa:
The corresponding cluster files are here: cluster_id.txt cluster_score.txt
I thought the mistake could be related to the fact that I didn't provide a number to cluster_score, but I changed the string for numbers, and the same error appear again. Then I read more carefully the error, and I think it is related to pandas, but not sure what is the issue exactly