Establish histology database, physical inventory, and management plan

[sr320]

We should start considering how to organize things and how to document all of this stuff. It'd be killer to have links to corresponding images in the database, as well as info on post-embedding sampling info (i.e. RNA/DNA isolations).

moved from https://github.com/RobertsLab/resources/issues/213

[sr320]

https://github.com/RobertsLab/resources/wiki/Data-Management#histology-data-management-plan

[kubu4]

Beginning to parse full timestamp from file names:

Example:

ls -l --time-style=full-iso /mnt/owl/phainopepla/C_gigas/2016-12-05/20161205_Sample_8.raw | awk '{print $6, $7}' | tr -d "-" | tr ' ' '_' | tr -d :

Outputs:

20161208_094059.000000000

[kubu4]

Updated code:

ls -l --time-style=full-iso /mnt/owl/phainopepla/C_gigas/2016-12-05/20161205_Sample_8.raw | awk '{print $6, $7}' | tr -d - | tr -d : | cut -c 1-15

Output:

20161208 094059

[kubu4]

Final fix!

ls -l --time-style=full-iso /mnt/owl/phainopepla/C_gigas/2016-12-05/20161205_Sample_8.raw | awk '{print $6, $7}' | tr -d - | tr -d : | tr ' ' '_' | cut -c 1-15

Output:

20161208_094059