RobertsLab / hackweek-2019

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Use Binder for troubleshooting, teaching, paper publication #3

Open sr320 opened 5 years ago

kubu4 commented 5 years ago

Binder link: https://mybinder.org/

yaaminiv commented 5 years ago

Link to play around with Binder: https://mybinder.org/v2/gh/fish546-2018/yaamini-virginica/master

yaaminiv commented 5 years ago

Notes:

@kubu4 repo that now has bedtools: https://mybinder.org/v2/gh/kubu4/yaamini-virginica/master

For using Binder...need a .yml file. bedtools was sources from bioconda. Can look at that file here:

https://hub.gke.mybinder.org/user/kubu4-yaamini-virginica-fwpt16cj/edit/environment.yml

TL;DR: Have a .yml file for specifying applications that need to be loaded