search

RobertsLab / project-olympia.oyster-genomic

1 stars 3 forks source link

Add SRA numbers for Illumina Genome Seq Data #26

Closed sr320 closed 7 years ago

sr320 commented 7 years ago

Please add SRA links/accessions for Illumina data on wiki https://github.com/RobertsLab/project-olympia.oyster-genomic/wiki/Genome-sequencing-September-2015

kubu4 commented 7 years ago

These haven't been published. Should I change release date to tomorrow (earliest date I can enter)?

sr320 commented 7 years ago

Sure- but I thought I saw four entries in SRA when searching for GBS that indicated genome sequencing? On Wed, Apr 19, 2017 at 7:09 AM kubu4 notifications@github.com wrote:

These haven't been published. Should I change release date to tomorrow (earliest date I can enter)?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/RobertsLab/project-olympia.oyster-genomic/issues/26#issuecomment-295282740, or mute the thread https://github.com/notifications/unsubscribe-auth/AEPHt8UDJ5Vf-GH7GDK1aT305DCdeaomks5rxhVNgaJpZM4NBsfQ .

kubu4 commented 7 years ago

Probably this? PRJNA316624

OMG! The SRA is such a total cluster! In the "Submission Dashboard" view, it looks like this hasn't been published (because it's waiting on two additional files).

However, the four sets of FASTQ files that are complete have actually been published!!!

submission___submit___sequence_read_archive___ncbi_nlm_nih_v_0_7_2

sr320 commented 7 years ago

Next submission- might want to try EBI On Wed, Apr 19, 2017 at 7:27 AM kubu4 notifications@github.com wrote:

Probably this? PRJNA316624 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA316624

OMG! The SRA is such a total cluster! In the "Submission Dashboard" view, it looks like this hasn't been published (because it's waiting on two additional files).

However, the four sets of FASTQ files that are complete have actually been published!!!

[image: submissionsubmitsequence_read_archive___ncbi_nlm_nih_v_0_7_2] https://cloud.githubusercontent.com/assets/4514104/25185169/7bb6675a-24d1-11e7-8262-a12862ffdd72.png

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/RobertsLab/project-olympia.oyster-genomic/issues/26#issuecomment-295288827, or mute the thread https://github.com/notifications/unsubscribe-auth/AEPHt97lXsiyzq3SStbPyr7UvufqzjaOks5rxhmlgaJpZM4NBsfQ .

kubu4 commented 7 years ago

Uploading remaining two files. Links to all other files have been added. Will add remaining links once published.