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RobertsLab / project-sc-RNAseq

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perform GO enrichment on gastrula cell groups #3

Open mgavery opened 2 years ago

mgavery commented 2 years ago

Perform GO enrichment on the "top marker" genes for each partition. The background for all genes is in the "all genes" link. The marker genes (top 25, 40 and 80 genes) are also provided. For the marker genes, enrichment should be performed on each partition separately. In these files the partition is labeled "cell_group". The gene ID is listed in the column "gene_id".

all genes: https://gannet.fish.washington.edu:5001/sharing/Ra8F2cH1C top25: https://gannet.fish.washington.edu:5001/sharing/4VIKzHDQG top40: https://gannet.fish.washington.edu:5001/sharing/uwgGa8aPD top80: https://gannet.fish.washington.edu:5001/sharing/L7YvQz2tk

sr320 commented 2 years ago

Starting to work on this at https://github.com/RobertsLab/project-sc-RNAseq/blob/main/code/01-Enrichment.Rmd