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Annotate Cgigas marker genes #1105

Closed sr320 closed 3 years ago

sr320 commented 3 years ago

Based on SC RNA-seq here is a gene table to annotate based on genes in model species. etc. topmarker_bla_mitov7_top10perCluster.txt

sr320 commented 3 years ago

@mgavery here is a draft (version 1.1)

https://github.com/sr320/nb-2021/blob/main/C_gigas/analyses/top.annotv1.1.tab

sr320 commented 3 years ago

here is a(version 1.2 ) - with sea urchin gene symbols

https://github.com/sr320/nb-2021/blob/main/C_gigas/analyses/top.annotv1.2.tab

pic

sr320 commented 3 years ago

There are now tables at https://github.com/sr320/nb-2021/tree/main/C_gigas/analyses

Where select supplemental tables from Spur scRNA-seq paper are joined with top markers..

specifically

tab

sr320 commented 3 years ago

here is a(version 1.3 ) - with sea urchin gene symbols + no evalue limit on sea urchin blast.

https://github.com/sr320/nb-2021/blob/main/C_gigas/analyses/top.annotv1.3.tab

sr320 commented 3 years ago

There are now tables at https://github.com/sr320/nb-2021/tree/main/C_gigas/analyses

Where select supplemental tables from Spur scRNA-seq paper are joined with top markers.. using 1.3 annotations.