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Compare top marker genes in oyster and geoduck scRNAseq data #1749

Open sr320 opened 10 months ago

meganewing commented 10 months ago

can you provide a bit more info on this please? or which oyster / geoduck data you're referring to

sr320 commented 9 months ago

geoduck top marker genes: https://github.com/sr320/paper-geoduck-gene-exp/blob/main/data/geoduck_topmarkers_annot.txt

oyster top marker genes: https://docs.google.com/spreadsheets/d/1FwwQP7-bHOjVpJjQivAw2Clw2B71Vndr/edit#gid=598008114

sr320 commented 8 months ago

@meganewing you mention you add results on this?

meganewing commented 8 months ago

whoops just saw this -- https://github.com/meganewing/oyster-geoduck-topmarkers/blob/main/output/top_marker_oyster_geoduck_common.csv

sr320 commented 8 months ago

thanks- but looking for a url to a notebook post explaining what you did and the results.

meganewing commented 8 months ago

lot more brief than the rnaseq one since it was a lot less involved. https://meganewing.github.io/mewing-notebook/posts/2024-01/oyster_geoduck_topmarker.html