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Annotate assembled unmapped reads #2022

Closed sr320 closed 1 week ago

sr320 commented 2 weeks ago

to determine what non-target species code be in the data

https://gannet.fish.washington.edu/seashell/bu-github/project-pycno-multispecies-2023/output/08-trinity-unmapped/Trinity.fasta

kubu4 commented 2 weeks ago

To clarify, are we talking functional annotation (i.e. SwissProt IDs) or are we talking taxonomic annotation?

sr320 commented 2 weeks ago

taxonomic - might not be worth it given findings with megan

On Fri, Nov 8, 2024 at 2:09 PM kubu4 @.***> wrote:

To clarify, are we talking functional annotation (i.e. SwissProt IDs) or are we talking taxonomic annotation?

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kubu4 commented 2 weeks ago

Thanks.

I'll just throw it in and see what happens.

sr320 commented 1 week ago

... interesting mainly common sea star (echinoderm)