search

RobertsLab / resources

https://robertslab.github.io/resources/
17 stars 10 forks source link

Species database for RepeatMasker #683

Closed yaaminiv closed 5 years ago

yaaminiv commented 5 years ago

I have the following text in the C. virginica methylation draft paper (based on this notebook entry):

Putative transposable elements were identified using RepeatMasker (v4.07) with RepBase-20170127 and RMBlast 2.6.0 (Smit et al. 2013-2015). All species available in the database were used to identify transposable elements.

@kubu4 is there an actual name/version number for this species database? Or is it built into RepeatMasker?

kubu4 commented 5 years ago

RepBase-20170127