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Question regarding published dataset PXD000835 #991

Closed sr320 closed 4 years ago

sr320 commented 4 years ago

I have a question regarding the raw file names of one of your published datasets (PXD000835; C. gigas; 400/2800 µatm). http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000835-2&test=no Could you explain to me the naming scheme of the raw files? I understand those are technical triplicates, so 24 files are from the acidification experiment without mechanical stimulation at the end of the month and the other 24 are with mechanical stimulation. Could you kindly explain to me which raw files belong to which treatment(s)?

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emmats commented 4 years ago

This is going to take me a minute. Luckily, I provide much more metadata with my PRIDE uploads now, but this was my first and I didn't do a great job. I need to track down my external hard drive that has my old computer on it. Last I saw it, Izzy was using it as part of his equipment for recon missions around the house.

emmats commented 4 years ago

Related: Does anyone have a cable that will connect my LaCie hard drive to my Mac? LaCie

sr320 commented 4 years ago

I would imagine we have cables that would work in the conference room.

On Aug 17, 2020, 9:31 AM -0700, emmats notifications@github.com, wrote:

Related: Does anyone have a cable that will connect my LaCie hard drive to my Mac? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

kubu4 commented 4 years ago

Yes, but you'd probably get it faster if you just order what you need/want from Amazon. (FYI, the one on the far right is a USB connector; you might have one lying around)

emmats commented 4 years ago

I've looked at my lying around cables and came up with nothing. If my dad doesn't have one I'll order it.

kubu4 commented 4 years ago

This may seem like a dumb question, but you do have the power cable for that drive, right?

emmats commented 4 years ago

Not a dumb question. I don't remember it ever having a power cable. It doesn't seem to come with one - https://www.apple.com/shop/product/HKVD2ZM/A/lacie-1tb-rugged-usb-c-portable-drive?afid=p238%7Cs7c5F8Ep7-dc_mtid_1870765e38482_pcrid_246387003753_pgrid_15434682490_&cid=aos-us-kwgo-pla-btb-catchall--slid---product-HKVD2ZM/A

kubu4 commented 4 years ago

That's not the drive you have.

emmats commented 4 years ago

I know that, but mine is super old and I figured it is pretty similar. If I need a power cord I will hunt that down too. As I mentioned earlier, Izzy decided this was his toy a while back (I blame the orange and social isolation) so the entire situation is a bit of a disaster.

kubu4 commented 4 years ago

You will need a power cable.

emmats commented 4 years ago

.raw mass spec file names follow this pattern: date of experiment_tank#_oyster#_replicate# Tank# 103B are ambient pH Tank# 101B are low pH Oysters that were mechanically stressed: 32, 29, 26, 35, 242, 245, 251, 248 Oysters that were not mechanically stressed: 5,8,2,11,227,221,230,224