Hello,

My issue seems similar to other Centos 7 users, however, I have not resolved it yet.

I installed GSL 2.7 from source using default settings. Below is the output when attempting to install the gsl R package.

x-gzip' length 222357 bytes (217 KB)

downloaded 217 KB

installing source package ‘gsl’ ... package ‘gsl’ successfully unpacked and MD5 sums checked using staged installation checking for gsl-config... /usr/local/bin/gsl-config checking if GSL version >= 2.1... checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... -std=gnu11 yes configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c airy.c -o airy.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c bessel.c -o bessel.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c clausen.c -o clausen.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c coulomb.c -o coulomb.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c coupling.c -o coupling.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dawson.c -o dawson.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c debye.c -o debye.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dilog.c -o dilog.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c ellint.c -o ellint.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c elljac.c -o elljac.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c error.c -o error.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c expint.c -o expint.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c fermi_dirac.c -o fermi_dirac.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c gamma.c -o gamma.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c gegenbauer.c -o gegenbauer.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c hyperg.c -o hyperg.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c init.c -o init.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c laguerre.c -o laguerre.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c lambert.c -o lambert.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c legendre.c -o legendre.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c log.c -o log.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c poly.c -o poly.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c pow_int.c -o pow_int.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c psi.c -o psi.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c qrng.c -o qrng.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c rng.c -o rng.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c synchrotron.c -o synchrotron.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c transport.c -o transport.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c trig.c -o trig.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c vector.c -o vector.o gcc -m64 -std=gnu99 -I"/usr/include/R" -DNDEBUG -I/usr/local/include -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c zeta.c -o zeta.o gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o gsl.so airy.o bessel.o clausen.o coulomb.o coupling.o dawson.o debye.o dilog.o ellint.o elljac.o error.o expint.o fermi_dirac.o gamma.o gegenbauer.o hyperg.o init.o laguerre.o lambert.o legendre.o log.o poly.o pow_int.o psi.o qrng.o rng.o synchrotron.o transport.o trig.o vector.o zeta.o -L/usr/local/lib -lgsl -lgslcblas -lm -L/usr/lib64/R/lib -lR installing to /home/sdc/R/00LOCK-gsl/00new/gsl/libs R inst byte-compile and prepare package for lazy loading help installing help indices converting help for package ‘gsl’ finding HTML links ... done Airy html
Bessel html
Clausen html
Coulomb html
Coupling html
Dawson html
Debye html
Dilog html
Ellint html
Elljac html
Error html
Expint html
Fermi-Dirac html
Gamma html
Gegenbauer html
Hyperg html
Laguerre html
Lambert html
Legendre html
Log html
Misc html
Multimin html
Poly html
Pow_int html
Psi html
Qrng html
Rng html
Synchrotron html
Transport html
Trig html
Zeta html
gsl-deprecated html
gsl-package html
copying figures building package indices installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ‘gsl’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/home/sdc/R/00LOCK-gsl/00new/gsl/libs/gsl.so': libgsl.so.27: cannot open shared object file: No such file or directory Error: loading failed Execution halted ERROR: loading failed
removing ‘/home/sdc/R/gsl’

The downloaded source packages are in ‘/tmp/Rtmp0aLRKc/downloaded_packages’

++ Note: @ 12:31:10 This package has been installed on the computer: gsl

Warning message: In install.packages(pkgs_miss, dep = TRUE, repos = site) : installation of package ‘gsl’ had non-zero exit status

==========================================

Any suggestions would be greatly appreciated.

Thanks, Eddie

RobinHankin / gsl

Centos 7 Unable to Install gsl #21

Installing package into ‘/home/sdc/R’ (as ‘lib’ is unspecified) trying URL 'http://cran.us.r-project.org/src/contrib/gsl_2.1-7.1.tar.gz' Content type 'application/x-gzip' length 222357 bytes (217 KB)