RoboStack / ros-humble

Recipes for ROS 2 Humble Hawksbill
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ros_env uses home-brew python and numpy fails #215

Closed cemoke closed 1 month ago

cemoke commented 1 month ago

Solution to issue cannot be found in the documentation.

Issue

I get the following error when I try to import numpy in mamba ros_env using ros-humble

Python 3.11.8 | packaged by conda-forge | (main, Feb 16 2024, 20:49:36) [Clang 16.0.6 ] on darwin Type "help", "copyright", "credits" or "license" for more information.

import numpy Traceback (most recent call last): File "/opt/homebrew/lib/python3.12/site-packages/numpy/_core/init.py", line 23, in from . import multiarray File "/opt/homebrew/lib/python3.12/site-packages/numpy/_core/multiarray.py", line 10, in from . import overrides File "/opt/homebrew/lib/python3.12/site-packages/numpy/_core/overrides.py", line 8, in from numpy._core._multiarray_umath import ( ModuleNotFoundError: No module named 'numpy._core._multiarray_umath'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/opt/homebrew/lib/python3.12/site-packages/numpy/init.py", line 114, in from numpy.config import show as show_config File "/opt/homebrew/lib/python3.12/site-packages/numpy/config.py", line 4, in from numpy._core._multiarray_umath import ( File "/opt/homebrew/lib/python3.12/site-packages/numpy/_core/init.py", line 49, in raise ImportError(msg) ImportError:

IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

Importing the numpy C-extensions failed. This error can happen for many reasons, often due to issues with your setup or how NumPy was installed.

We have compiled some common reasons and troubleshooting tips at:

https://numpy.org/devdocs/user/troubleshooting-importerror.html

Please note and check the following:

and make sure that they are the versions you expect. Please carefully study the documentation linked above for further help.

Original error was: No module named 'numpy._core._multiarray_umath'

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "", line 1, in File "/opt/homebrew/lib/python3.12/site-packages/numpy/init.py", line 119, in raise ImportError(msg) from e ImportError: Error importing numpy: you should not try to import numpy from its source directory; please exit the numpy source tree, and relaunch your python interpreter from there.

for some reason, when I use mamba to activate ros_env, it adds homebrew's python to my PYTHONPATH, and then different versions of numpy result in this issue. Can you please help me to resolve the issue?

Installed packages

# packages in environment at /Users/cembilaloglu/miniforge3/envs/ros_env:
#
# Name                    Version                   Build  Channel
aiohappyeyeballs          2.4.3              pyhd8ed1ab_0    conda-forge
aiohttp                   3.10.9          py311h460d6c5_0    conda-forge
aiosignal                 1.3.1              pyhd8ed1ab_0    conda-forge
aom                       3.9.1                h7bae524_0    conda-forge
argcomplete               3.5.1              pyhd8ed1ab_0    conda-forge
assimp                    5.3.1                he63ff86_2    conda-forge
atk-1.0                   2.38.0               hd03087b_2    conda-forge
attrs                     24.2.0             pyh71513ae_0    conda-forge
blosc                     1.21.5               h9c252e8_1    conda-forge
boost                     1.82.0               hf3b2ce4_6    conda-forge
brotli                    1.1.0                hd74edd7_2    conda-forge
brotli-bin                1.1.0                hd74edd7_2    conda-forge
bullet                    3.25                 hf3b2ce4_3    conda-forge
bullet-cpp                3.25            py311h57524c7_3    conda-forge
bzip2                     1.0.8                h99b78c6_7    conda-forge
c-ares                    1.33.1               hd74edd7_0    conda-forge
c-compiler                1.8.0                h2664225_0    conda-forge
ca-certificates           2024.8.30            hf0a4a13_0    conda-forge
cairo                     1.18.0               hd1e100b_0    conda-forge
catkin_pkg                1.0.0              pyhd8ed1ab_0    conda-forge
catkin_tools              0.9.4              pyhd8ed1ab_0    conda-forge
cctools                   986                  hf67d63f_0    conda-forge
cctools_osx-arm64         986                  h998149b_0    conda-forge
certifi                   2024.8.30          pyhd8ed1ab_0    conda-forge
cffi                      1.17.1          py311h3a79f62_0    conda-forge
clang                     17.0.6          default_h360f5da_7    conda-forge
clang-17                  17.0.6          default_h146c034_7    conda-forge
clang_impl_osx-arm64      17.0.6              he47c785_19    conda-forge
clang_osx-arm64           17.0.6              h54d7cd3_19    conda-forge
clangxx                   17.0.6          default_h360f5da_7    conda-forge
clangxx_impl_osx-arm64    17.0.6              h50f59cd_19    conda-forge
clangxx_osx-arm64         17.0.6              h54d7cd3_19    conda-forge
cmake                     3.28.3               h50fd54c_0    conda-forge
colcon-argcomplete        0.3.3              pyhd8ed1ab_0    conda-forge
colcon-bash               0.5.0              pyhd8ed1ab_0    conda-forge
colcon-cd                 0.1.1              pyhd8ed1ab_0    conda-forge
colcon-cmake              0.2.28             pyhd8ed1ab_0    conda-forge
colcon-common-extensions  0.3.0           py311h267d04e_2    conda-forge
colcon-core               0.17.1             pyhd8ed1ab_0    conda-forge
colcon-defaults           0.2.8              pyhd8ed1ab_0    conda-forge
colcon-devtools           0.3.0              pyhd8ed1ab_0    conda-forge
colcon-library-path       0.2.1                      py_0    conda-forge
colcon-metadata           0.2.5                      py_0    conda-forge
colcon-output             0.2.13             pyhd8ed1ab_0    conda-forge
colcon-package-information 0.4.0              pyhd8ed1ab_0    conda-forge
colcon-package-selection  0.2.10                     py_0    conda-forge
colcon-parallel-executor  0.2.4                      py_0    conda-forge
colcon-pkg-config         0.1.0                      py_0    conda-forge
colcon-powershell         0.4.0              pyhd8ed1ab_0    conda-forge
colcon-python-setup-py    0.2.7                      py_0    conda-forge
colcon-recursive-crawl    0.2.3              pyhd8ed1ab_0    conda-forge
colcon-ros                0.5.0              pyhd8ed1ab_0    conda-forge
colcon-test-result        0.3.8                      py_0    conda-forge
colcon-zsh                0.5.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
coloredlogs               15.0.1             pyhd8ed1ab_3    conda-forge
compiler-rt               17.0.6               h856b3c1_2    conda-forge
compiler-rt_osx-arm64     17.0.6               h832e737_2    conda-forge
compilers                 1.8.0                hce30654_0    conda-forge
console_bridge            1.0.2                h3e96240_1    conda-forge
contourpy                 1.3.0           py311h2c37856_2    conda-forge
coreutils                 9.5                  h93a5062_0    conda-forge
coverage                  7.6.1           py311h460d6c5_1    conda-forge
cppcheck                  2.15.0          py311hd071e3f_1    conda-forge
cryptography              43.0.1          py311h47c44cf_0    conda-forge
cxx-compiler              1.8.0                he8d86c4_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
dav1d                     1.2.1                hb547adb_0    conda-forge
distlib                   0.3.8              pyhd8ed1ab_0    conda-forge
distro                    1.9.0              pyhd8ed1ab_0    conda-forge
docutils                  0.21.2             pyhd8ed1ab_0    conda-forge
double-conversion         3.3.0                h13dd4ca_0    conda-forge
eigen                     3.4.0                h1995070_0    conda-forge
empy                      3.3.4              pyh9f0ad1d_1    conda-forge
exceptiongroup            1.2.2              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hb7217d7_1    conda-forge
ffmpeg                    6.1.1           gpl_hc16618e_112    conda-forge
flake8                    7.1.1              pyhd8ed1ab_0    conda-forge
flann                     1.9.2                hd2cfa1e_1    conda-forge
fmt                       10.2.1               h2ffa867_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_3    conda-forge
fontconfig                2.14.2               h82840c6_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.54.1          py311h460d6c5_0    conda-forge
foonathan-memory          0.7.2                hb7217d7_1    conda-forge
fortran-compiler          1.8.0                hc3477c4_0    conda-forge
freeimage                 3.18.0              hd0e3f39_20    conda-forge
freetype                  2.12.1               hadb7bae_2    conda-forge
fribidi                   1.0.10               h27ca646_0    conda-forge
frozenlist                1.4.1           py311h460d6c5_1    conda-forge
gdk-pixbuf                2.42.12              h7ddc832_0    conda-forge
gettext                   0.22.5               h8414b35_3    conda-forge
gettext-tools             0.22.5               h8414b35_3    conda-forge
gfortran                  13.2.0               h1ca8e4b_1    conda-forge
gfortran_impl_osx-arm64   13.2.0               h252ada1_3    conda-forge
gfortran_osx-arm64        13.2.0               h57527a5_1    conda-forge
giflib                    5.2.2                h93a5062_0    conda-forge
gl2ps                     1.4.2                h17b34a0_0    conda-forge
glew                      2.1.0                h9f76cd9_2    conda-forge
glib                      2.80.2               h535f939_0    conda-forge
glib-tools                2.80.2               h4c882b9_0    conda-forge
gmock                     1.14.0               hce30654_2    conda-forge
gmp                       6.3.0                h7bae524_2    conda-forge
gnutls                    3.7.9                hd26332c_0    conda-forge
graphite2                 1.3.13            hebf3989_1003    conda-forge
graphviz                  9.0.0                h3face73_1    conda-forge
gst-plugins-base          1.24.4               h8a8f8c8_0    conda-forge
gstreamer                 1.24.4               h430e707_0    conda-forge
gtest                     1.14.0               h420ef59_2    conda-forge
gtk2                      2.24.33              h7895bb2_4    conda-forge
gts                       0.7.6                he42f4ea_4    conda-forge
harfbuzz                  8.5.0                h1836168_0    conda-forge
hdf4                      4.2.15               h2ee6834_7    conda-forge
hdf5                      1.14.3          nompi_hec07895_105    conda-forge
humanfriendly             10.0               pyhd8ed1ab_6    conda-forge
icu                       73.2                 hc8870d7_0    conda-forge
idna                      3.10               pyhd8ed1ab_0    conda-forge
imath                     3.1.11               h1059232_0    conda-forge
importlib-metadata        8.5.0              pyha770c72_0    conda-forge
importlib_resources       6.4.5              pyhd8ed1ab_0    conda-forge
iniconfig                 2.0.0              pyhd8ed1ab_0    conda-forge
isl                       0.26            imath32_h347afa1_101    conda-forge
jasper                    4.2.4                h6c4e4ef_0    conda-forge
jsoncpp                   1.9.5                hc021e02_1    conda-forge
jxrlib                    1.1                  h93a5062_3    conda-forge
kiwisolver                1.4.7           py311h2c37856_0    conda-forge
krb5                      1.21.3               h237132a_0    conda-forge
lame                      3.100             h1a8c8d9_1003    conda-forge
lark-parser               0.12.0             pyhd8ed1ab_1    conda-forge
lcms2                     2.16                 ha0e7c42_0    conda-forge
ld64                      711                  h39a299f_0    conda-forge
ld64_osx-arm64            711                  h6a44367_0    conda-forge
lerc                      4.0.0                h9a09cb3_0    conda-forge
libabseil                 20240116.2      cxx17_h00cdb27_1    conda-forge
libaec                    1.1.3                hebf3989_0    conda-forge
libasprintf               0.22.5               h8414b35_3    conda-forge
libasprintf-devel         0.22.5               h8414b35_3    conda-forge
libass                    0.17.1               hf7da4fe_1    conda-forge
libblas                   3.9.0           24_osxarm64_openblas    conda-forge
libboost                  1.82.0               h72cdd8a_6    conda-forge
libboost-devel            1.82.0               hf450f58_6    conda-forge
libboost-headers          1.82.0               hce30654_6    conda-forge
libboost-python           1.82.0          py311hddbb800_6    conda-forge
libboost-python-devel     1.82.0          py311hf3b2ce4_6    conda-forge
libbrotlicommon           1.1.0                hd74edd7_2    conda-forge
libbrotlidec              1.1.0                hd74edd7_2    conda-forge
libbrotlienc              1.1.0                hd74edd7_2    conda-forge
libcblas                  3.9.0           24_osxarm64_openblas    conda-forge
libclang-cpp15            15.0.7          default_he012953_5    conda-forge
libclang-cpp17            17.0.6          default_h146c034_7    conda-forge
libclang13                18.1.7          default_hb9c8b4a_0    conda-forge
libcurl                   8.8.0                h7b6f9a7_1    conda-forge
libcxx                    19.1.1               ha82da77_0    conda-forge
libcxx-devel              17.0.6               h86353a2_6    conda-forge
libdeflate                1.20                 h93a5062_0    conda-forge
libedit                   3.1.20191231         hc8eb9b7_2    conda-forge
libev                     4.33                 h93a5062_2    conda-forge
libexpat                  2.5.0                hb7217d7_1    conda-forge
libffi                    3.4.2                h3422bc3_5    conda-forge
libgd                     2.3.3                hfdf3952_9    conda-forge
libgettextpo              0.22.5               h8414b35_3    conda-forge
libgettextpo-devel        0.22.5               h8414b35_3    conda-forge
libgfortran               5.0.0           13_2_0_hd922786_3    conda-forge
libgfortran-devel_osx-arm64 13.2.0               h5d7a38c_3    conda-forge
libgfortran5              13.2.0               hf226fd6_3    conda-forge
libglib                   2.80.2               h535f939_0    conda-forge
libhwloc                  2.11.1          default_h7685b71_1000    conda-forge
libiconv                  1.17                 h0d3ecfb_2    conda-forge
libidn2                   2.3.7                h93a5062_0    conda-forge
libignition-cmake2        2.17.2               h00cdb27_0    conda-forge
libignition-math6         6.15.1          py311h550b051_2    conda-forge
libintl                   0.22.5               h8414b35_3    conda-forge
libintl-devel             0.22.5               h8414b35_3    conda-forge
libjpeg-turbo             3.0.0                hb547adb_1    conda-forge
liblapack                 3.9.0           24_osxarm64_openblas    conda-forge
liblapacke                3.9.0           24_osxarm64_openblas    conda-forge
libllvm15                 15.0.7               h2621b3d_4    conda-forge
libllvm17                 17.0.6               haab561b_1    conda-forge
libllvm18                 18.1.7               hdac5640_0    conda-forge
libnetcdf                 4.9.2           nompi_he469be0_114    conda-forge
libnghttp2                1.58.0               ha4dd798_1    conda-forge
libogg                    1.3.5                h99b78c6_0    conda-forge
libopenblas               0.3.27          openmp_h517c56d_1    conda-forge
libopencv                 4.9.0           headless_py311h2b50112_15    conda-forge
libopenvino               2024.1.0             h5c9529b_7    conda-forge
libopenvino-arm-cpu-plugin 2024.1.0             h5c9529b_7    conda-forge
libopenvino-auto-batch-plugin 2024.1.0             hcd65546_7    conda-forge
libopenvino-auto-plugin   2024.1.0             hcd65546_7    conda-forge
libopenvino-hetero-plugin 2024.1.0             h88cb26a_7    conda-forge
libopenvino-ir-frontend   2024.1.0             h88cb26a_7    conda-forge
libopenvino-onnx-frontend 2024.1.0             h32b5460_7    conda-forge
libopenvino-paddle-frontend 2024.1.0             h32b5460_7    conda-forge
libopenvino-pytorch-frontend 2024.1.0             h00cdb27_7    conda-forge
libopenvino-tensorflow-frontend 2024.1.0             h2741c3b_7    conda-forge
libopenvino-tensorflow-lite-frontend 2024.1.0             h00cdb27_7    conda-forge
libopus                   1.3.1                h27ca646_1    conda-forge
libpng                    1.6.43               h091b4b1_0    conda-forge
libpq                     16.4                 h671472c_2    conda-forge
libprotobuf               4.25.3               hbfab5d5_0    conda-forge
libraw                    0.21.1               h2ee6834_2    conda-forge
librsvg                   2.58.1               hbc281fb_0    conda-forge
libsqlite                 3.46.0               hfb93653_0    conda-forge
libssh2                   1.11.0               h7a5bd25_0    conda-forge
libtasn1                  4.19.0               h1a8c8d9_0    conda-forge
libtheora                 1.1.1             h99b78c6_1006    conda-forge
libtiff                   4.6.0                h07db509_3    conda-forge
libunistring              0.9.10               h3422bc3_0    conda-forge
libuv                     1.49.0               hd74edd7_0    conda-forge
libvorbis                 1.3.7                h9f76cd9_0    conda-forge
libvpx                    1.14.1               h7bae524_0    conda-forge
libwebp                   1.4.0                h54798ee_0    conda-forge
libwebp-base              1.4.0                h93a5062_0    conda-forge
libxcb                    1.15                 hf346824_0    conda-forge
libxml2                   2.12.7               ha661575_1    conda-forge
libxslt                   1.1.39               h223e5b9_0    conda-forge
libzip                    1.10.1               ha0bc3c6_3    conda-forge
libzlib                   1.2.13               hfb2fe0b_6    conda-forge
llvm-openmp               19.1.0               h6cdba0f_1    conda-forge
llvm-tools                17.0.6               haab561b_1    conda-forge
loguru                    0.7.2           py311h267d04e_2    conda-forge
lxml                      5.2.2           py311hf9a6a72_0    conda-forge
lz4-c                     1.9.4                hb7217d7_0    conda-forge
make                      4.4.1                hc9fafa5_2    conda-forge
matplotlib-base           3.9.2           py311hbe3227e_1    conda-forge
mccabe                    0.7.0              pyhd8ed1ab_0    conda-forge
mpc                       1.3.1                h8f1351a_1    conda-forge
mpfr                      4.2.1                hb693164_3    conda-forge
msgpack-python            1.1.0           py311h2c37856_0    conda-forge
multidict                 6.1.0           py311h426a4a9_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mysql-common              8.3.0                hd1853d3_4    conda-forge
mysql-libs                8.3.0                hf036fc4_4    conda-forge
ncurses                   6.5                  h7bae524_1    conda-forge
netifaces                 0.11.0          py311heffc1b2_2    conda-forge
nettle                    3.9.1                h40ed0f5_0    conda-forge
ninja                     1.12.1               h420ef59_0    conda-forge
nlohmann_json             3.11.3               h00cdb27_1    conda-forge
nspr                      4.35                 hb7217d7_0    conda-forge
nss                       3.100                hc6e9f88_0    conda-forge
numpy                     1.26.4          py311h7125741_0    conda-forge
openexr                   3.2.2                h2c51e1d_1    conda-forge
openh264                  2.4.1                hebf3989_0    conda-forge
openjpeg                  2.5.2                h9f1df11_0    conda-forge
openssl                   3.3.2                h8359307_0    conda-forge
orocos-kdl                1.5.1                hf9b8971_7    conda-forge
osrf_pycommon             0.2.1              pyhd8ed1ab_0    conda-forge
p11-kit                   0.24.1               h29577a5_0    conda-forge
packaging                 24.1               pyhd8ed1ab_0    conda-forge
pango                     1.54.0               h5cb9fbc_0    conda-forge
pcl                       1.13.1               hc87a3e3_3    conda-forge
pcre                      8.45                 hbdafb3b_0    conda-forge
pcre2                     10.43                h26f9a81_0    conda-forge
pep517                    0.13.0             pyhd8ed1ab_0    conda-forge
pillow                    10.3.0          py311h0b5d0a1_0    conda-forge
pip                       24.2               pyh8b19718_1    conda-forge
pixman                    0.43.4               hebf3989_0    conda-forge
pkg-config                0.29.2            hab62308_1008    conda-forge
pluggy                    1.5.0              pyhd8ed1ab_0    conda-forge
ply                       3.11               pyhd8ed1ab_2    conda-forge
proj                      9.3.1                h93d94ba_0    conda-forge
psutil                    6.0.0           py311h460d6c5_1    conda-forge
pthread-stubs             0.4               hd74edd7_1002    conda-forge
pugixml                   1.14                 h13dd4ca_0    conda-forge
py-opencv                 4.9.0           headless_py311h7e6d3fa_15    conda-forge
pybind11                  2.13.6          py311h2c37856_0    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pybind11-global           2.13.6          py311h2c37856_0    conda-forge
pybullet                  3.25            py311h57524c7_3    conda-forge
pycairo                   1.27.0          py311h84a5a08_0    conda-forge
pycodestyle               2.12.1             pyhd8ed1ab_0    conda-forge
pycparser                 2.22               pyhd8ed1ab_0    conda-forge
pydocstyle                6.3.0              pyhd8ed1ab_0    conda-forge
pydot                     3.0.1           py311h267d04e_1    conda-forge
pyflakes                  3.2.0              pyhd8ed1ab_0    conda-forge
pygments                  2.18.0             pyhd8ed1ab_0    conda-forge
pyparsing                 3.1.4              pyhd8ed1ab_0    conda-forge
pyqt                      5.15.9          py311hc49b008_5    conda-forge
pyqt-builder              1.15.4             pyhd8ed1ab_0    conda-forge
pyqt5-sip                 12.12.2         py311ha891d26_5    conda-forge
pytest                    8.3.3              pyhd8ed1ab_0    conda-forge
pytest-cov                5.0.0              pyhd8ed1ab_0    conda-forge
pytest-repeat             0.9.2              pyhd8ed1ab_0    conda-forge
pytest-rerunfailures      14.0               pyhd8ed1ab_0    conda-forge
python                    3.11.8          hdf0ec26_0_cpython    conda-forge
python-dateutil           2.9.0              pyhd8ed1ab_0    conda-forge
python_abi                3.11                    5_cp311    conda-forge
pyyaml                    6.0.2           py311h460d6c5_1    conda-forge
qhull                     2020.2               h420ef59_5    conda-forge
qt-main                   5.15.8              hf679f28_21    conda-forge
readline                  8.2                  h92ec313_1    conda-forge
rhash                     1.4.4                hb547adb_0    conda-forge
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ros-humble-rqt-reconfigure 1.1.2           py311hbfa132e_5    robostack-staging
ros-humble-rqt-service-caller 1.0.5           py311hbfa132e_5    robostack-staging
ros-humble-rqt-shell      1.0.2           py311hbfa132e_5    robostack-staging
ros-humble-rqt-srv        1.0.3           py311hbfa132e_5    robostack-staging
ros-humble-rqt-topic      1.5.0           py311hbfa132e_5    robostack-staging
ros-humble-rti-connext-dds-cmake-module 0.11.2          py311hbfa132e_5    robostack-staging
ros-humble-rviz-assimp-vendor 11.2.10         py311he51b96d_5    robostack-staging
ros-humble-rviz-common    11.2.10         py311h15ddf78_5    robostack-staging
ros-humble-rviz-default-plugins 11.2.10         py311h15ddf78_5    robostack-staging
ros-humble-rviz-ogre-vendor 11.2.10         py311h10bdd65_5    robostack-staging
ros-humble-rviz-rendering 11.2.10         py311h482bf09_5    robostack-staging
ros-humble-rviz2          11.2.10         py311h15ddf78_5    robostack-staging
ros-humble-sdl2-vendor    3.3.0           py311h3e2e443_5    robostack-staging
ros-humble-sensor-msgs    4.2.3           py311hbfa132e_5    robostack-staging
ros-humble-sensor-msgs-py 4.2.3           py311hbfa132e_5    robostack-staging
ros-humble-shape-msgs     4.2.3           py311hbfa132e_5    robostack-staging
ros-humble-shared-queues-vendor 0.15.9          py311hbfa132e_5    robostack-staging
ros-humble-spdlog-vendor  1.3.1           py311hdd42177_5    robostack-staging
ros-humble-sqlite3-vendor 0.15.9          py311h2cd3632_5    robostack-staging
ros-humble-sros2          0.10.4          py311hbfa132e_5    robostack-staging
ros-humble-sros2-cmake    0.10.4          py311hbfa132e_5    robostack-staging
ros-humble-statistics-msgs 1.2.1           py311hbfa132e_5    robostack-staging
ros-humble-std-msgs       4.2.3           py311hbfa132e_5    robostack-staging
ros-humble-std-srvs       4.2.3           py311hbfa132e_5    robostack-staging
ros-humble-stereo-msgs    4.2.3           py311hbfa132e_5    robostack-staging
ros-humble-tango-icons-vendor 0.1.1           py311hbfa132e_5    robostack-staging
ros-humble-teleop-twist-joy 2.4.5           py311hbfa132e_5    robostack-staging
ros-humble-teleop-twist-keyboard 2.3.2           py311hbfa132e_5    robostack-staging
ros-humble-tf2            0.25.5          py311h00a3625_5    robostack-staging
ros-humble-tf2-bullet     0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-eigen      0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-eigen-kdl  0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-geometry-msgs 0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-kdl        0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-msgs       0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-py         0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-ros        0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-ros-py     0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-sensor-msgs 0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tf2-tools      0.25.5          py311hbfa132e_5    robostack-staging
ros-humble-tinyxml-vendor 0.8.3           py311hbfa132e_5    robostack-staging
ros-humble-tinyxml2-vendor 0.7.6           py311hb90db5c_5    robostack-staging
ros-humble-topic-monitor  0.20.3          py311hbfa132e_5    robostack-staging
ros-humble-tracetools     4.1.1           py311hbfa132e_5    robostack-staging
ros-humble-trajectory-msgs 4.2.3           py311hbfa132e_5    robostack-staging
ros-humble-turtlesim      1.4.2           py311h15ddf78_5    robostack-staging
ros-humble-uncrustify-vendor 2.0.2           py311hbfa132e_5    robostack-staging
ros-humble-unique-identifier-msgs 2.2.1           py311hbfa132e_5    robostack-staging
ros-humble-urdf           2.6.0           py311hbfa132e_5    robostack-staging
ros-humble-urdf-parser-plugin 2.6.0           py311hbfa132e_5    robostack-staging
ros-humble-urdfdom        3.0.2           py311h00a3625_5    robostack-staging
ros-humble-urdfdom-headers 1.0.6           py311hbfa132e_5    robostack-staging
ros-humble-visualization-msgs 4.2.3           py311hbfa132e_5    robostack-staging
ros-humble-yaml-cpp-vendor 8.0.2           py311hbfa132e_5    robostack-staging
ros-humble-zstd-vendor    0.15.9          py311h223718a_5    robostack-staging
ros2-distro-mutex         0.5.0                    humble    robostack-staging
rosdep                    0.25.1             pyhd8ed1ab_0    conda-forge
rosdistro                 0.9.0           py311h267d04e_2    conda-forge
rospkg                    1.5.1              pyhd8ed1ab_0    conda-forge
sdl2                      2.30.7               hf9b8971_0    conda-forge
setuptools                75.1.0             pyhd8ed1ab_0    conda-forge
sigtool                   0.1.3                h44b9a77_0    conda-forge
sip                       6.8.6           py311h3f08180_1    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.2.1                hd02b534_0    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
spdlog                    1.12.0               he64bfa9_2    conda-forge
sqlite                    3.46.0               h5838104_0    conda-forge
svt-av1                   2.1.0                h7bae524_0    conda-forge
tapi                      1100.0.11            he4954df_0    conda-forge
tbb                       2021.13.0            h7b3277c_0    conda-forge
tbb-devel                 2021.13.0            h8e01b61_0    conda-forge
tinyxml                   2.6.2                h260d524_2    conda-forge
tinyxml2                  10.0.0               hebf3989_0    conda-forge
tk                        8.6.13               h5083fa2_1    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.2              pyhd8ed1ab_0    conda-forge
tzdata                    2024b                hc8b5060_0    conda-forge
uncrustify                0.74.0               h6b3803e_0    conda-forge
utfcpp                    4.0.5                hce30654_0    conda-forge
vtk                       9.2.6           qt_py311h1234567_223    conda-forge
vtk-base                  9.2.6           qt_py311h1234567_223    conda-forge
vtk-io-ffmpeg             9.2.6           qt_py311h1234567_223    conda-forge
wheel                     0.44.0             pyhd8ed1ab_0    conda-forge
wslink                    2.2.1              pyhd8ed1ab_0    conda-forge
x264                      1!164.3095           h57fd34a_2    conda-forge
x265                      3.5                  hbc6ce65_3    conda-forge
xorg-kbproto              1.0.7             hd74edd7_1003    conda-forge
xorg-libice               1.1.1                hd74edd7_1    conda-forge
xorg-libsm                1.2.4                hd74edd7_1    conda-forge
xorg-libx11               1.8.9                h570a39f_0    conda-forge
xorg-libxau               1.0.11               hd74edd7_1    conda-forge
xorg-libxaw               1.0.14               h3422bc3_1    conda-forge
xorg-libxdmcp             1.1.5                hd74edd7_0    conda-forge
xorg-libxext              1.3.4                h1a8c8d9_2    conda-forge
xorg-libxmu               1.1.3                h99b78c6_1    conda-forge
xorg-libxpm               3.5.17               hb547adb_0    conda-forge
xorg-libxrandr            1.5.2                h3422bc3_1    conda-forge
xorg-libxrender           0.9.11               hb547adb_0    conda-forge
xorg-libxt                1.3.0                hb547adb_1    conda-forge
xorg-randrproto           1.5.0             hd74edd7_1002    conda-forge
xorg-renderproto          0.11.1            hd74edd7_1003    conda-forge
xorg-xextproto            7.3.0             hd74edd7_1004    conda-forge
xorg-xproto               7.0.31            hd74edd7_1008    conda-forge
xz                        5.2.6                h57fd34a_0    conda-forge
yaml                      0.2.5                h3422bc3_2    conda-forge
yaml-cpp                  0.8.0                h13dd4ca_0    conda-forge
yarl                      1.13.1          py311h460d6c5_0    conda-forge
zipp                      3.20.2             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               hfb2fe0b_6    conda-forge
zstd                      1.5.6                hb46c0d2_0    conda-forge
zziplib                   0.13.69              he1e0b03_1    conda-forge

Environment info

mamba version : 1.5.10
     active environment : ros_env
    active env location : /Users/cembilaloglu/miniforge3/envs/ros_env
            shell level : 2
       user config file : /Users/cembilaloglu/.condarc
 populated config files : /Users/cembilaloglu/miniforge3/.condarc
                          /Users/cembilaloglu/miniforge3/envs/ros_env/.condarc
          conda version : 24.9.1
    conda-build version : not installed
         python version : 3.12.6.final.0
                 solver : libmamba (default)
       virtual packages : __archspec=1=m1
                          __conda=24.9.1=0
                          __osx=14.6.1=0
                          __unix=0=0
       base environment : /Users/cembilaloglu/miniforge3  (writable)
      conda av data dir : /Users/cembilaloglu/miniforge3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/robostack-staging/osx-arm64
                          https://conda.anaconda.org/robostack-staging/noarch
                          https://conda.anaconda.org/conda-forge/osx-arm64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /Users/cembilaloglu/miniforge3/pkgs
                          /Users/cembilaloglu/.conda/pkgs
       envs directories : /Users/cembilaloglu/miniforge3/envs
                          /Users/cembilaloglu/.conda/envs
               platform : osx-arm64
             user-agent : conda/24.9.1 requests/2.32.3 CPython/3.12.6 Darwin/23.6.0 OSX/14.6.1 solver/libmamba conda-libmamba-solver/24.7.0 libmambapy/1.5.10
                UID:GID : 501:20
             netrc file : None
           offline mode : False
traversaro commented 1 month ago

Are you sure that is the mamba activate that adds homebrew's site-packages to your PYTHONPATH? Can you report the ouput of the env command before and after the activation (make sure that you remove any confidential env variables such as token or secres).

cemoke commented 1 month ago

You are right. After more investigation, I realized the problem was not related to the robostack environment but to my setup. So, I am closing the issue.