tudoroancea
commented
1 year ago Interestingly enough, if I uninstall this python version from pyenv, it still finds a 3.11.1 python executable and I have no idea why
Closed tudoroancea closed 1 year ago
tudoroancea
commented
1 year ago Interestingly enough, if I uninstall this python version from pyenv, it still finds a 3.11.1 python executable and I have no idea why
traversaro
commented
1 year ago Just in case, here is the list of ros packages in my conda env:
Can you report all the packages installed in your environment? As this seems to be related to the interaction with CMake with the Python packages, for example it is interesting to understand which version of numpy do you have installed, as CMake seems to complain it is not able to find numpy.
Interestingly enough, if I uninstall this python version from pyenv, it still finds a 3.11.1 python executable and I have no idea why
Are you trying with a clean build directory? Otherwise this could influence the result. Anyhow, probably the best way to debug this is to upload the CMakeCache.txt of the package whose build its failing (it should be in ws/build/<nameofpkgthatisfailing>/CMakeCache.txt) . Furthermore, it would be also interesting to get the output of env of the terminal in which you are running colcon (make sure that it does not include anything that it can't be shared such as API tokens or similar.
traversaro
commented
1 year ago By the way, did you tried to not initialize pyenv at all?
tudoroancea
commented
1 year ago I tried to comment out the lines initializing pyenv in my .zshrc and still obtained the same error, on a fresh new build (I removed the build and install dirs). Here is the list of installed packages in the conda env:
# packages in environment at /Users/tudoroancea/miniforge3/envs/ros_humble:
#
# Name Version Build Channel
aiohttp 3.8.3 py310h8e9501a_1 conda-forge
aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge
aom 3.5.0 h7ea286d_0 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
argcomplete 1.12.3 pyhd8ed1ab_0 conda-forge
assimp 5.2.5 h276577b_0 conda-forge
asttokens 2.2.1 pyhd8ed1ab_0 conda-forge
async-timeout 4.0.2 pyhd8ed1ab_0 conda-forge
atk-1.0 2.38.0 hcb7b3dd_1 conda-forge
attrs 22.2.0 pyh71513ae_0 conda-forge
black 22.12.0 py310hbe9552e_0 conda-forge
boost 1.78.0 py310h629746b_4 conda-forge
boost-cpp 1.78.0 h1cb353e_1 conda-forge
brotli 1.0.9 h1a8c8d9_8 conda-forge
brotli-bin 1.0.9 h1a8c8d9_8 conda-forge
brotlipy 0.7.0 py310h8e9501a_1005 conda-forge
bullet 3.21 h69fb684_4 conda-forge
bullet-cpp 3.21 py310h2b830bf_4 conda-forge
bzip2 1.0.8 h3422bc3_4 conda-forge
c-ares 1.18.1 h3422bc3_0 conda-forge
c-compiler 1.5.2 h5008568_0 conda-forge
ca-certificates 2022.12.7 h4653dfc_0 conda-forge
cairo 1.16.0 h73a0509_1014 conda-forge
catkin_pkg 0.5.2 pyhd8ed1ab_0 conda-forge
cctools 973.0.1 hcbb26d4_11 conda-forge
cctools_osx-arm64 973.0.1 hef52d2f_11 conda-forge
certifi 2022.12.7 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py310h2399d43_3 conda-forge
cfgv 3.3.1 pyhd8ed1ab_0 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
clang 14.0.6 hce30654_0 conda-forge
clang-14 14.0.6 default_h81a5282_0 conda-forge
clang_osx-arm64 14.0.6 h15773ab_4 conda-forge
clangxx 14.0.6 default_hb7ecf47_0 conda-forge
clangxx_osx-arm64 14.0.6 he29aa18_4 conda-forge
click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
cmake 3.25.1 hf234bd0_0 conda-forge
colcon-argcomplete 0.3.3 pyhd8ed1ab_0 conda-forge
colcon-bash 0.4.2 pyhd8ed1ab_0 conda-forge
colcon-cd 0.1.1 pyhd8ed1ab_0 conda-forge
colcon-cmake 0.2.27 pyhd8ed1ab_0 conda-forge
colcon-common-extensions 0.3.0 py310hbe9552e_1 conda-forge
colcon-core 0.10.0 pyhd8ed1ab_0 conda-forge
colcon-defaults 0.2.5 py_0 conda-forge
colcon-devtools 0.2.2 py_0 conda-forge
colcon-library-path 0.2.1 py_0 conda-forge
colcon-metadata 0.2.5 py_0 conda-forge
colcon-output 0.2.12 py_0 conda-forge
colcon-package-information 0.3.3 py_0 conda-forge
colcon-package-selection 0.2.10 py_0 conda-forge
colcon-parallel-executor 0.2.4 py_0 conda-forge
colcon-pkg-config 0.1.0 py_0 conda-forge
colcon-powershell 0.3.6 py_0 conda-forge
colcon-python-setup-py 0.2.7 py_0 conda-forge
colcon-recursive-crawl 0.2.1 py_0 conda-forge
colcon-ros 0.3.23 pyhd8ed1ab_0 conda-forge
colcon-test-result 0.3.8 py_0 conda-forge
colcon-zsh 0.4.0 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
coloredlogs 15.0.1 pyhd8ed1ab_3 conda-forge
compiler-rt 14.0.6 h30b49de_0 conda-forge
compiler-rt_osx-arm64 14.0.6 h48302dc_0 conda-forge
compilers 1.5.2 hce30654_0 conda-forge
console_bridge 1.0.2 h3e96240_1 conda-forge
contourpy 1.0.7 py310h2887b22_0 conda-forge
coverage 7.0.5 py310h8e9501a_0 conda-forge
cppcheck 2.7.5 py310hf3ebaa5_1 conda-forge
cryptography 39.0.0 py310h4fe9c50_0 conda-forge
curl 7.87.0 hbe9bab4_0 conda-forge
cxx-compiler 1.5.2 hffc8910_0 conda-forge
cycler 0.11.0 pyhd8ed1ab_0 conda-forge
distlib 0.3.6 pyhd8ed1ab_0 conda-forge
distro 1.6.0 pyhd8ed1ab_0 conda-forge
docutils 0.19 py310hbe9552e_1 conda-forge
double-conversion 3.2.0 hb7217d7_1 conda-forge
eigen 3.4.0 hc021e02_0 conda-forge
empy 3.3.4 pyh9f0ad1d_1 conda-forge
exceptiongroup 1.1.0 pyhd8ed1ab_0 conda-forge
executing 1.2.0 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hb7217d7_0 conda-forge
ffmpeg 5.1.2 gpl_hf318d42_105 conda-forge
filelock 3.9.0 pyhd8ed1ab_0 conda-forge
flake8 6.0.0 pyhd8ed1ab_0 conda-forge
flann 1.9.1 hd3e9afc_1011 conda-forge
fmt 9.1.0 hffc8910_0 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 hab24e00_0 conda-forge
fontconfig 2.14.1 h82840c6_0 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.38.0 py310h8e9501a_1 conda-forge
foonathan-memory 0.7.2 hb7217d7_1 conda-forge
fortran-compiler 1.5.2 h2ccabda_0 conda-forge
freeimage 3.18.0 hb513136_10 conda-forge
freetype 2.12.1 hd633e50_1 conda-forge
fribidi 1.0.10 h27ca646_0 conda-forge
frozenlist 1.3.3 py310h8e9501a_0 conda-forge
gdk-pixbuf 2.42.8 h4f389bb_1 conda-forge
gettext 0.21.1 h0186832_0 conda-forge
gfortran 11.3.0 h1ca8e4b_0 conda-forge
gfortran_impl_osx-arm64 11.3.0 h2a9d086_27 conda-forge
gfortran_osx-arm64 11.3.0 h57527a5_0 conda-forge
giflib 5.2.1 h27ca646_2 conda-forge
gl2ps 1.4.2 h17b34a0_0 conda-forge
glew 2.1.0 h9f76cd9_2 conda-forge
glib 2.74.1 hb5ab8b9_1 conda-forge
glib-tools 2.74.1 hb5ab8b9_1 conda-forge
gmock 1.12.1 hffc8910_0 conda-forge
gmp 6.2.1 h9f76cd9_0 conda-forge
gnutls 3.7.8 h9f1a10d_0 conda-forge
graphite2 1.3.13 h9f76cd9_1001 conda-forge
graphviz 7.0.5 h4f8fbd6_0 conda-forge
gst-plugins-base 1.21.3 h8b7775e_1 conda-forge
gstreamer 1.21.3 hcb7b3dd_1 conda-forge
gtest 1.12.1 hffc8910_0 conda-forge
gtk2 2.24.33 h57013de_2 conda-forge
gts 0.7.6 h4b6d4d6_2 conda-forge
harfbuzz 6.0.0 hddbc195_0 conda-forge
hdf4 4.2.15 h1a38d6a_5 conda-forge
hdf5 1.12.2 nompi_h55deafc_101 conda-forge
humanfriendly 10.0 py310hbe9552e_4 conda-forge
icu 70.1 h6b3803e_0 conda-forge
identify 2.5.13 pyhd8ed1ab_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
imath 3.1.6 hb5ab8b9_1 conda-forge
importlib-metadata 6.0.0 pyha770c72_0 conda-forge
importlib_resources 5.10.2 pyhd8ed1ab_0 conda-forge
iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge
isl 0.25 h9a09cb3_0 conda-forge
jasper 2.0.33 hba35424_0 conda-forge
jpeg 9e he4db4b2_2 conda-forge
jsoncpp 1.9.5 hc021e02_1 conda-forge
jxrlib 1.1 h27ca646_2 conda-forge
kiwisolver 1.4.4 py310h2887b22_1 conda-forge
krb5 1.20.1 h127bd45_0 conda-forge
lame 3.100 h1a8c8d9_1003 conda-forge
lark-parser 0.12.0 pyhd8ed1ab_0 conda-forge
lcms2 2.14 h8193b64_0 conda-forge
ld64 609 h619f069_11 conda-forge
ld64_osx-arm64 609 h7167370_11 conda-forge
lerc 4.0.0 h9a09cb3_0 conda-forge
libaec 1.0.6 hb7217d7_1 conda-forge
libblas 3.9.0 16_osxarm64_openblas conda-forge
libbrotlicommon 1.0.9 h1a8c8d9_8 conda-forge
libbrotlidec 1.0.9 h1a8c8d9_8 conda-forge
libbrotlienc 1.0.9 h1a8c8d9_8 conda-forge
libcblas 3.9.0 16_osxarm64_openblas conda-forge
libclang 14.0.6 default_h81a5282_0 conda-forge
libclang-cpp14 14.0.6 default_h81a5282_0 conda-forge
libclang13 14.0.6 default_he70ec0d_0 conda-forge
libcurl 7.87.0 hbe9bab4_0 conda-forge
libcxx 14.0.6 h2692d47_0 conda-forge
libdeflate 1.14 h1a8c8d9_0 conda-forge
libedit 3.1.20191231 hc8eb9b7_2 conda-forge
libev 4.33 h642e427_1 conda-forge
libffi 3.4.2 h3422bc3_5 conda-forge
libgd 2.3.3 hede1055_3 conda-forge
libgfortran 5.0.0 11_3_0_hd922786_27 conda-forge
libgfortran-devel_osx-arm64 11.3.0 hfe9555d_27 conda-forge
libgfortran5 11.3.0 hdaf2cc0_27 conda-forge
libglib 2.74.1 h4646484_1 conda-forge
libiconv 1.17 he4db4b2_0 conda-forge
libidn2 2.3.4 h1a8c8d9_0 conda-forge
libignition-cmake2 2.16.0 hb7217d7_1 conda-forge
libignition-math6 6.13.0 py310ha89aef0_1 conda-forge
liblapack 3.9.0 16_osxarm64_openblas conda-forge
liblapacke 3.9.0 16_osxarm64_openblas conda-forge
libllvm14 14.0.6 hf6e71e7_1 conda-forge
libnetcdf 4.8.1 nompi_h2510be2_106 conda-forge
libnghttp2 1.51.0 hd184df1_0 conda-forge
libogg 1.3.4 h27ca646_1 conda-forge
libopenblas 0.3.21 openmp_hc731615_3 conda-forge
libopencv 4.6.0 py310h57eab40_8 conda-forge
libopus 1.3.1 h27ca646_1 conda-forge
libpng 1.6.39 h76d750c_0 conda-forge
libpq 15.1 hbce9e56_3 conda-forge
libprotobuf 3.21.12 hb5ab8b9_0 conda-forge
libraw 0.20.2 h1a38d6a_2 conda-forge
librsvg 2.54.4 ha2634a2_0 conda-forge
libsqlite 3.40.0 h76d750c_0 conda-forge
libssh2 1.10.0 hb80f160_3 conda-forge
libtasn1 4.19.0 h1a8c8d9_0 conda-forge
libtheora 1.1.1 h3422bc3_1005 conda-forge
libtiff 4.4.0 heb92581_5 conda-forge
libtool 2.4.7 hb7217d7_0 conda-forge
libunistring 0.9.10 h3422bc3_0 conda-forge
libuv 1.44.2 he4db4b2_0 conda-forge
libvorbis 1.3.7 h9f76cd9_0 conda-forge
libvpx 1.11.0 hc470f4d_3 conda-forge
libwebp 1.2.4 h328b37c_0 conda-forge
libwebp-base 1.2.4 h57fd34a_0 conda-forge
libxcb 1.13 h9b22ae9_1004 conda-forge
libxml2 2.10.3 h87b0503_0 conda-forge
libxslt 1.1.37 h1bd8bc4_0 conda-forge
libzip 1.9.2 h96606af_1 conda-forge
libzlib 1.2.13 h03a7124_4 conda-forge
llvm-openmp 15.0.7 h7cfbb63_0 conda-forge
llvm-tools 14.0.6 hf6e71e7_1 conda-forge
loguru 0.6.0 py310hbe9552e_2 conda-forge
lxml 4.9.2 py310h85b680a_0 conda-forge
lz4-c 1.9.3 hbdafb3b_1 conda-forge
make 4.3 he57ea6c_1 conda-forge
matplotlib 3.5.3 py310hb6292c7_2 conda-forge
matplotlib-base 3.5.3 py310h78c5c2f_2 conda-forge
mccabe 0.7.0 pyhd8ed1ab_0 conda-forge
mpc 1.2.1 h309154c_0 conda-forge
mpfr 4.1.0 h6d7a090_1 conda-forge
multidict 6.0.4 py310h8e9501a_0 conda-forge
munkres 1.1.4 pyh9f0ad1d_0 conda-forge
mypy_extensions 0.4.3 py310hbe9552e_6 conda-forge
mysql-common 8.0.31 hab468bb_0 conda-forge
mysql-libs 8.0.31 hea58576_0 conda-forge
ncurses 6.3 h07bb92c_1 conda-forge
netifaces 0.11.0 py310h8e9501a_1 conda-forge
nettle 3.8.1 h63371fa_1 conda-forge
ninja 1.11.0 hf86a087_0 conda-forge
nlohmann_json 3.11.2 h2e04ded_0 conda-forge
nodeenv 1.7.0 pyhd8ed1ab_0 conda-forge
nspr 4.35 hb7217d7_0 conda-forge
nss 3.78 h1483a63_0 conda-forge
numpy 1.24.1 py310h5d7c261_0 conda-forge
ogre 1.12.13 h9144a23_3 conda-forge
openexr 3.1.5 h264c651_1 conda-forge
openh264 2.3.1 hb7217d7_1 conda-forge
openjpeg 2.5.0 h5d4e404_1 conda-forge
openssl 1.1.1s h03a7124_1 conda-forge
orocos-kdl 1.5.1 hb7217d7_4 conda-forge
p11-kit 0.24.1 h29577a5_0 conda-forge
packaging 23.0 pyhd8ed1ab_0 conda-forge
pango 1.50.12 h6c112b8_1 conda-forge
pathspec 0.10.3 pyhd8ed1ab_0 conda-forge
pcl 1.12.1 h4d3e839_4 conda-forge
pcre 8.45 hbdafb3b_0 conda-forge
pcre2 10.40 hb34f9b4_0 conda-forge
pep517 0.13.0 pyhd8ed1ab_0 conda-forge
pillow 9.2.0 py310h9337a76_3 conda-forge
pip 22.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.40.0 h27ca646_0 conda-forge
pkg-config 0.29.2 hab62308_1008 conda-forge
platformdirs 2.6.2 pyhd8ed1ab_0 conda-forge
pluggy 1.0.0 py310hbe9552e_4 conda-forge
ply 3.11 py_1 conda-forge
pooch 1.6.0 pyhd8ed1ab_0 conda-forge
pre-commit 2.21.0 py310hbe9552e_0 conda-forge
proj 9.1.0 h3bdf472_0 conda-forge
psutil 5.9.4 py310h8e9501a_0 conda-forge
pthread-stubs 0.4 h27ca646_1001 conda-forge
pugixml 1.11.4 hbdafb3b_0 conda-forge
py-opencv 4.6.0 py310h69fb684_8 conda-forge
pybind11 2.10.3 py310h2887b22_0 conda-forge
pybind11-abi 4 hd8ed1ab_3 conda-forge
pybind11-global 2.10.3 py310h2887b22_0 conda-forge
pybrains 0.0.0 dev_0 <develop>
pybullet 3.21 py310h2b830bf_4 conda-forge
pycairo 1.23.0 py310h3439bbb_0 conda-forge
pycodestyle 2.10.0 pyhd8ed1ab_0 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydocstyle 6.3.0 pyhd8ed1ab_0 conda-forge
pydot 1.4.2 py310hbe9552e_3 conda-forge
pyflakes 3.0.1 pyhd8ed1ab_0 conda-forge
pygments 2.11.2 pyhd8ed1ab_0 conda-forge
pyopenssl 23.0.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge
pyqt 5.15.7 py310h7aaa74b_2 conda-forge
pyqt-builder 1.14.0 pyhd8ed1ab_0 conda-forge
pyqt5-sip 12.11.0 py310h0f1eb42_2 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
pytest 7.2.1 pyhd8ed1ab_0 conda-forge
pytest-cov 4.0.0 pyhd8ed1ab_0 conda-forge
pytest-repeat 0.9.1 pyhd8ed1ab_0 conda-forge
pytest-rerunfailures 11.0 pyhd8ed1ab_0 conda-forge
python 3.10.8 hf452327_0_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python-devtools 0.10.0 pyhd8ed1ab_0 conda-forge
python_abi 3.10 3_cp310 conda-forge
pyyaml 6.0 py310h8e9501a_5 conda-forge
qhull 2020.2 hc021e02_2 conda-forge
qt-main 5.15.6 hda43d4a_5 conda-forge
quadprog 0.1.11 pypi_0 pypi
readline 8.1.2 h46ed386_0 conda-forge
requests 2.28.2 pyhd8ed1ab_0 conda-forge
rhash 1.4.3 he4db4b2_0 conda-forge
ros-humble-action-msgs 1.2.1 py310h927cc32_2 robostack-staging
ros-humble-action-tutorials-cpp 0.20.2 py310h927cc32_2 robostack-staging
ros-humble-action-tutorials-interfaces 0.20.2 py310h927cc32_2 robostack-staging
ros-humble-action-tutorials-py 0.20.2 py310h927cc32_2 robostack-staging
ros-humble-actionlib-msgs 4.2.2 py310h927cc32_2 robostack-staging
ros-humble-ament-cmake 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-auto 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-copyright 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-core 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-cppcheck 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-cpplint 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-export-definitions 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-export-dependencies 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-export-include-directories 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-export-interfaces 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-export-libraries 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-export-link-flags 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-export-targets 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-flake8 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-gen-version-h 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-gmock 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-gtest 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-include-directories 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-libraries 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-lint-cmake 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-pep257 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-pytest 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-python 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-ros 0.10.0 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-target-dependencies 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-test 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-uncrustify 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-version 1.3.3 py310hd751b12_2 robostack-staging
ros-humble-ament-cmake-xmllint 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-copyright 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cppcheck 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-cpplint 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-flake8 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-index-cpp 1.4.0 py310hd751b12_2 robostack-staging
ros-humble-ament-index-python 1.4.0 py310hd751b12_2 robostack-staging
ros-humble-ament-lint 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-lint-auto 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-lint-cmake 0.12.4 py310hd751b12_2 robostack-staging
ros-humble-ament-lint-common 0.12.4 py310hd751b12_2 robostack-staging
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toml 0.10.2 pyhd8ed1ab_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.2 py310h8e9501a_1 conda-forge
trajectory-planning-helpers 2.0.5 dev_0 <develop>
typing-extensions 4.4.0 hd8ed1ab_0 conda-forge
typing_extensions 4.4.0 pyha770c72_0 conda-forge
tzdata 2022g h191b570_0 conda-forge
ukkonen 1.0.1 py310h2887b22_3 conda-forge
uncrustify 0.74.0 h6b3803e_0 conda-forge
unicodedata2 15.0.0 py310h8e9501a_0 conda-forge
urllib3 1.26.14 pyhd8ed1ab_0 conda-forge
utfcpp 3.2.3 hce30654_0 conda-forge
virtualenv 20.17.1 py310hbe9552e_0 conda-forge
vtk 9.2.2 qt_py310hc6e6bcd_205 conda-forge
wheel 0.38.4 pyhd8ed1ab_0 conda-forge
wslink 1.10.0 pyhd8ed1ab_0 conda-forge
x264 1!164.3095 h57fd34a_2 conda-forge
x265 3.5 hbc6ce65_3 conda-forge
xorg-kbproto 1.0.7 h27ca646_1002 conda-forge
xorg-libice 1.0.10 h27ca646_0 conda-forge
xorg-libsm 1.2.3 h27ca646_1000 conda-forge
xorg-libx11 1.7.2 h3422bc3_0 conda-forge
xorg-libxau 1.0.9 h27ca646_0 conda-forge
xorg-libxaw 1.0.14 h3422bc3_1 conda-forge
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xorg-libxext 1.3.4 h27ca646_1 conda-forge
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xorg-libxpm 3.5.13 h3422bc3_0 conda-forge
xorg-libxrandr 1.5.2 h3422bc3_1 conda-forge
xorg-libxrender 0.9.10 h27ca646_1003 conda-forge
xorg-libxt 1.2.1 h27ca646_2 conda-forge
xorg-randrproto 1.5.0 h3422bc3_1001 conda-forge
xorg-renderproto 0.11.1 h27ca646_1002 conda-forge
xorg-xextproto 7.3.0 h27ca646_1002 conda-forge
xorg-xproto 7.0.31 h27ca646_1007 conda-forge
xz 5.2.6 h57fd34a_0 conda-forge
yaml 0.2.5 h3422bc3_2 conda-forge
yaml-cpp 0.7.0 hb7217d7_2 conda-forge
yarl 1.8.2 py310h8e9501a_0 conda-forge
zipp 3.11.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.13 h03a7124_4 conda-forge
zstd 1.5.2 hf913c23_5 conda-forge
zziplib 0.13.69 he1e0b03_1 conda-forgeand here is the list of env vars:
TERM_SESSION_ID=w1t0p0:FEC446B3-4897-448C-AEDF-AF1ED6C7956E
SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.ayLmNDKvPe/Listeners
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PWD=/Users/tudoroancea/Developer/racing_team/rospoc
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PATH=/Users/tudoroancea/miniforge3/envs/ros_humble/bin:/Users/tudoroancea/miniforge3/condabin:/opt/homebrew/bin:/opt/homebrew/sbin:/opt/homebrew/opt/qt@5/bin:/opt/homebrew/opt/openjdk/bin:/opt/homebrew:/usr/local/bin:/usr/local/sbin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/opt/X11/bin:/Users/tudoroancea/Library/Application Support/JetBrains/Toolbox/scripts
DISPLAY=/private/tmp/com.apple.launchd.xRakJh6UMi/org.xquartz:0
LC_TERMINAL=iTerm2
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HOME=/Users/tudoroancea
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FORCESPATH=/Users/tudoroancea/forces_pro_client
PYTHONPATH=/Users/tudoroancea/miniforge3/envs/ros_humble/lib/python310/site-packages:/Users/tudoroancea/miniforge3/envs/ros_humble/lib/python3.10/site-packages:/Users/tudoroancea/miniforge3/envs/ros_humble/lib/python3.1/site-packages::/Users/tudoroancea/forces_pro_client:/Users/tudoroancea/local
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CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem /Users/tudoroancea/miniforge3/envs/ros_humble/include
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CXX_FOR_BUILD=/Users/tudoroancea/miniforge3/envs/ros_humble/bin/arm64-apple-darwin20.0.0-clang++
CXXFLAGS=-ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -isystem /Users/tudoroancea/miniforge3/envs/ros_humble/include
DEBUG_CXXFLAGS=-ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -stdlib=libc++ -fvisibility-inlines-hidden -fmessage-length=0 -Og -g -Wall -Wextra -isystem /Users/tudoroancea/miniforge3/envs/ros_humble/include
GSETTINGS_SCHEMA_DIR_CONDA_BACKUP=
GSETTINGS_SCHEMA_DIR=/Users/tudoroancea/miniforge3/envs/ros_humble/share/glib-2.0/schemas
PROJ_DATA=/Users/tudoroancea/miniforge3/envs/ros_humble/share/proj
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AMENT_PREFIX_PATH=/Users/tudoroancea/miniforge3/envs/ros_humble
ROS_DISTRO=humble
ROS_LOCALHOST_ONLY=0
ROS_PYTHON_VERSION=3
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RMW_IMPLEMENTATION=rmw_cyclonedds_cpp
ROS_ETC_DIR=/Users/tudoroancea/miniforge3/envs/ros_humble/etc/ros
_=/usr/bin/envand here is the CmakeCache.txt:
# This is the CMakeCache file.
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# It was generated by CMake: /Users/tudoroancea/miniforge3/envs/ros_humble/bin/cmake
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BUILD_SHARED_LIBS:BOOL=ON
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//The SOABI suffix for Python native extensions. See PEP-3149:
// https://www.python.org/dev/peps/pep-3149/.
PYTHON_SOABI:INTERNAL=cpython-310-darwin
//The full suffix for Python native extensions. See PEP-3149: https://www.python.org/dev/peps/pep-3149/.
PythonExtra_EXTENSION_SUFFIX:INTERNAL=.cpython-310-darwin
//The paths to the Python include directories.
PythonExtra_INCLUDE_DIRS:INTERNAL=/Users/tudoroancea/miniforge3/envs/ros_humble/include/python3.10;/Users/tudoroancea/miniforge3/envs/ros_humble/include/python3.10
//The libraries that need to be linked against for Python extensions.
PythonExtra_LIBRARIES:INTERNAL=
//Compiler reason failure
_Python3_Compiler_REASON_FAILURE:INTERNAL=
_Python3_DEVELOPMENT_EMBED_SIGNATURE:INTERNAL=845109328e5823bf6dc2f9505a76451c
_Python3_DEVELOPMENT_MODULE_SIGNATURE:INTERNAL=c2a9a4043eba8791510b9dd11c740285
_Python3_EXECUTABLE:INTERNAL=/opt/homebrew/Frameworks/Python.framework/Versions/3.11/bin/python3.11
//Path to a file.
_Python3_INCLUDE_DIR:INTERNAL=/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11
//Python3 Properties
_Python3_INTERPRETER_PROPERTIES:INTERNAL=Python;3;11;1;64;;cpython-311-darwin;/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11;/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11;/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages;/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages
_Python3_INTERPRETER_SIGNATURE:INTERNAL=9af7aa9dccd61f082b164a191cd68f9c
//Interpreter reason failure
_Python3_Interpreter_REASON_FAILURE:INTERNAL=
//Path to a library.
_Python3_LIBRARY_RELEASE:INTERNAL=/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/libpython3.11.dylib
//Path to a file.
_Python3_NumPy_INCLUDE_DIR:INTERNAL=_Python3_NumPy_INCLUDE_DIR-NOTFOUND
//NumPy reason failure
_Python3_NumPy_REASON_FAILURE:INTERNAL=
//Index for unique symlink install targets
__AMENT_CMAKE_SYMLINK_INSTALL_TARGETS_INDEX:INTERNAL=0From this CMakeCache.txt I found out that I still have a python 3.11 that was installed in Homebrew as dependency of other packages. However, I checked and it had numpy installed.
When uninstalling it, everything worked fine :tada:
It is nonetheless a strange behavior, right?
traversaro
commented
1 year ago It is nonetheless a strange behavior, right?
In general in conda-forge and robostack packaging we try to make sure that non-conda packages are not found by CMake, but it is not simple to do so. For example, I suspect that in this case FindPython.cmake module (the code behind the find_package(Python3 REQUIRED) call) prefer always the newest Python, so this may be the reason why the homebrew Python. In general, it is convenient to minimize the amount of other python that are installed in the system. Another trick is to explicitly specify which Python to use to CMake, via:
--cmake-args "-DPython_EXECUTABLE=$CONDA_PYTHON_EXE -DPython3_EXECUTABLE=$CONDA_PYTHON_EXE`if you are using colcon or:
-DPython_EXECUTABLE=$CONDA_PYTHON_EXE -DPython3_EXECUTABLE=$CONDA_PYTHON_EXEif you are invoking CMake directly.
tudoroancea
commented
1 year ago That works just fine! thank you very much for all your help !
duyu
commented
11 months ago is this an issue: CMAKE_PREFIX_PATH=:/Users/tudoroancea/miniforge3/envs/ros_humble?
I'm not sure why this is set with a : symbol though, I checked in ros_noetic env, it's without :.
Anyone could help check this?
Tobias-Fischer
commented
11 months ago It shouldn’t matter, the : is simply treated as path separation
duyu
commented
11 months ago You are right, thanks;)
Hi there,
I am trying to follow the following tutorial to create custom ros interfaces but for some reason when I try to build the package with
colcon buildI get the following error:I think this has something to do with another python version I installed with pyenv (3.11.1 like mentioned in the error message) but I cannot figure out why because I init pyenv before conda in my
.zshrcfile and when I dowhich python3, the first interpreter that is found is the one installed in the conda env in which ros is installed. Do you have any idea how to fix this and if this may come from the ros installation or is a colcon issue?Just in case, here is the list of ros packages in my conda env:
Thanks a lot for your help!
Best wishes,
Ted