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Feedback on the ROBOKOP project
https://robokop.renci.org
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Automate AOPs and create AOP templates #213

Open karafecho opened 7 months ago

karafecho commented 7 months ago

This issue is intended to begin thinking through an approach for automating AOP generating and (related) creating templated AOPs.

I think we can build off of this (more-or-less) complete AOP:

image

Here's the JSON query and response:

ROBOKOP_PM2.5-TLR4-MYD88-IL1Rbinding-IL-1B-asthma_message.json ROBOKOP_PM2.5-TLR4-MYD88-IL1Rbinding-IL-1B-asthma_query.json

I think that the approach I used to generate this AOP can be generalized and used for automation, but I haven't completed the necessary testing. Essentially, one would start from each end of the AOP (in the example here, "particulate matter" and "asthma") and then sequentially build up each end by working from one end at a time and leveraging the results from each iteration.

karafecho commented 7 months ago

Longer term, we can probably pull icees-kg and cam-kg into the effort, but that is definitely a long-term goal.

For example, see: https://github.com/RobokopU24/qgraph/issues/278.