Open cbizon opened 1 year ago
Cytoscape has a community detection and diffusion algorithm that we may want to include in robokop
This is a list of papers from Dexter Pratt that describe the method and its use:
https://www.sciencedirect.com/science/article/pii/S1097276521003130 https://www.mdpi.com/1999-4915/14/3/611 https://www.nature.com/articles/s41564-021-00964-2
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008239
https://apps.cytoscape.org/apps/cycommunitydetection
https://www.biorxiv.org/content/10.1101/2022.10.24.513552v1.abstract www.ndexbio.org/iquery
Background https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpz1.258
Cytoscape has a community detection and diffusion algorithm that we may want to include in robokop
This is a list of papers from Dexter Pratt that describe the method and its use:
https://www.sciencedirect.com/science/article/pii/S1097276521003130 https://www.mdpi.com/1999-4915/14/3/611 https://www.nature.com/articles/s41564-021-00964-2
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008239
https://apps.cytoscape.org/apps/cycommunitydetection
https://www.biorxiv.org/content/10.1101/2022.10.24.513552v1.abstract www.ndexbio.org/iquery
Background https://currentprotocols.onlinelibrary.wiley.com/doi/full/10.1002/cpz1.258