RobokopU24 / NewSourceProposals

New Knowledge Providers (KPs) for the Data Management Oversight Group (DMOG) to review
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integrative Biomedical Knowledge Hub (iBKH) #65

Open james0032 opened 1 month ago

james0032 commented 1 month ago

https://github.com/wcm-wanglab/iBKH/tree/main

iBKH integrates data from 17 publicly available biomedical databases. The current version of iBKH contains a total of 2,384,501 entities of 11 types. Specifically, the iBKH includes 23,003 anatomy entities, 19,236 disease entities, 37,997 drug entities, 88,376 gene entities, 2,065,015 molecule entities, 1,361 symptom entities, 4,101 DSI entities, 137,568 DSP entities, 605 TC entities, 2,988 pathway entities and 4,251 side-effect entities. For the relationships in the iBKH, there are 86 relation types within 18 kinds of entity pairs, including Anatomy-Gene, Drug-Disease, Drug-Drug, Drug-Gene, Disease-Disease, Disease-Gene, Disease-Symptom, Gene-Gene, DSI-Disease, DSI-Symptom, DSI-Drug, DSI-Anatomy, DSI-DSP, DSI-TC, Disease-Pathway, Drug-Pathway, Gene-Pathway and Drug-Side Effect. In total, iBKH contains 48,194,646 relations.

Note: Here is the list of integrated data sources: https://github.com/wcm-wanglab/iBKH/blob/main/Source%20Information/README.md

We can see some that's already in ROBOKOP, while others such as iDISK, Drug Repurposing Knowledge Graph, TISSUE, PharmGKB were likely not.