Reactome and neo4j 5 - Githubissues

RobokopU24 / ORION

Code that parses datasets from various sources and converts them to load graph databases.

MIT License

12 stars 13 forks source link

Reactome and neo4j 5 #247

Open EvanDietzMorris opened 2 months ago

EvanDietzMorris commented 2 months ago

Unfortunately the Reactome parser broke with the neo4j 5 implementation for ORION because their neo4j dump is neo4j 4.x

https://reactome.org/dev/graph-database

We probably just need to add the migration command as an option (neo4j-admin database migrate --force-btree-indexes-to-range) in neo4j_tools and have Reactome call that.