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RobokopU24 / ORION

Code that parses datasets from various sources and converts them to load graph databases.
MIT License
12 stars 13 forks source link

HMDB data review #57

Closed PhillipsOwen closed 3 years ago

PhillipsOwen commented 3 years ago

Comments/issues on data review.

cbizon commented 3 years ago

The UniProt nodenorm misses are apparently obsolete entries. OK to lose those.

cbizon commented 3 years ago

The HMDB terms are more trouble. For some reason unichem doesn't have these hmdb ids even though they have inchikeys. Added nn issue https://github.com/TranslatorSRI/NodeNormalization/issues/66

cbizon commented 3 years ago

The OMIM ids seem to be to genes. The most recent build of NN (not yet deployed) should pick these up.

cbizon commented 3 years ago

Some of the OMIMs are diseases, but they seem to also be in the most recent (undeployed) build.

cbizon commented 3 years ago

The json file doesn't have normalization results in it. Can you regenerate, @PhillipsOwen ?