bertini mpicc: No such file or directory when compiling drake-distro on master

[tarquasso]

when running make in drake-distro, get the following compile error

-- bertini make[2]: mpicc: No such file or directory make[2]: * [misc.o] Error 1 make[1]: * [/Users/rkk/Documents/MATLAB/drake-distro/build/bin/bertini] Error 2 make: *\ [all] Error 2

Found this in the readme of bertini: "To compile Bertini in parallel, you will additionally need: MPI implementation (e.g., MPICH, http://http://www.mpich.org/ or OpenMPI, http://www.open-mpi.org/)" Shall I manually install OpenMPI or another MPI solution?

[RussTedrake]

Rerun the install prereqs script (it will install mpich)

On May 12, 2015, at 11:40 AM, Robert Katzschmann notifications@github.com wrote:

when running make in drake-distro, get the following compile error

-- bertini

make[2]: mpicc: No such file or directory make[2]: * [misc.o] Error 1 make[1]: * [/Users/rkk/Documents/MATLAB/drake-distro/build/bin/bertini] Error 2 make: *\ [all] Error 2

Found this in the readme of bertini: "To compile Bertini in parallel, you will additionally need: MPI implementation (e.g., MPICH, http://http://www.mpich.org/ or OpenMPI, http://www.open-mpi.org/)" Shall I manually install OpenMPI or another MPI solution?

— Reply to this email directly or view it on GitHub.

[tarquasso]

thanks! that solved the problem!

Just to show what prereqs were missing: 30-9-152:drake-distro rkk$ brew update Already up-to-date. 30-9-152:drake-distro rkk$ ./install_prereqs.sh homebrew Warning: pkg-config-0.28 already installed Error: cmake-3.0.0 already installed To install this version, first brew unlink cmake' Error: gtk+-2.24.24 already installed To install this version, firstbrew unlink gtk+' installing prereqs for lcm Error: wget-1.15 already installed To install this version, first brew unlink wget' Error: xz-5.0.5 already installed To install this version, firstbrew unlink xz' Error: glib-2.40.0_1 already installed To install this version, first brew unlink glib' Error: coreutils-8.22 already installed To install this version, firstbrew unlink coreutils' installing prereqs for libbot Warning: jpeg-8d already installed Error: cmake-3.0.0 already installed To install this version, first brew unlink cmake' Error: gtk+-2.24.24 already installed To install this version, firstbrew unlink gtk+' Error: libpng-1.6.12 already installed To install this version, first brew unlink libpng' installing prereqs for eigen installing prereqs for bullet Warning: gnu-sed-4.2.2 already installed installing prereqs for octomap Error: cmake-3.0.0 already installed To install this version, firstbrew unlink cmake' ==> Downloading https://homebrew.bintray.com/bottles/doxygen-1.8.9.1.yosemite.bottle.tar.gz ######################################################################## 100.0% ==> Pouring doxygen-1.8.9.1.yosemite.bottle.tar.gz 🍺 /usr/local/Cellar/doxygen/1.8.9.1: 5 files, 15M installing prereqs for snopt Warning: gcc-4.9.2_1 already installed installing prereqs for gurobi ==> Downloading https://homebrew.bintray.com/bottles/curl-7.42.1.yosemite.bottle.tar.gz ######################################################################## 100.0% ==> Pouring curl-7.42.1.yosemite.bottle.tar.gz ==> Caveats This formula is keg-only, which means it was not symlinked into /usr/local.

Mac OS X already provides this software and installing another version in parallel can cause all kinds of trouble.

Generally there are no consequences of this for you. If you build your own software and it requires this formula, you'll need to add to your build variables:

LDFLAGS:  -L/usr/local/opt/curl/lib
CPPFLAGS: -I/usr/local/opt/curl/include

==> Summary 🍺 /usr/local/Cellar/curl/7.42.1: 305 files, 2.9M installing prereqs for bertini ==> Installing flex dependency: gettext ==> Downloading https://homebrew.bintray.com/bottles/gettext-0.19.4.yosemite.bottle.tar.gz ######################################################################## 100.0% ==> Pouring gettext-0.19.4.yosemite.bottle.tar.gz ==> Caveats This formula is keg-only, which means it was not symlinked into /usr/local.

Mac OS X provides similar software, and installing this software in parallel can cause all kinds of trouble.

OS X provides the BSD gettext library and some software gets confused if both are in the library path.

Generally there are no consequences of this for you. If you build your own software and it requires this formula, you'll need to add to your build variables:

LDFLAGS:  -L/usr/local/opt/gettext/lib
CPPFLAGS: -I/usr/local/opt/gettext/include

==> Summary 🍺 /usr/local/Cellar/gettext/0.19.4: 1920 files, 21M ==> Installing flex ==> Downloading https://homebrew.bintray.com/bottles/flex-2.5.39.yosemite.bottle.tar.gz ######################################################################## 100.0% ==> Pouring flex-2.5.39.yosemite.bottle.tar.gz ==> Caveats This formula is keg-only, which means it was not symlinked into /usr/local.

Mac OS X already provides this software and installing another version in parallel can cause all kinds of trouble.

Some formulae require a newer version of flex.

Generally there are no consequences of this for you. If you build your own software and it requires this formula, you'll need to add to your build variables:

LDFLAGS:  -L/usr/local/opt/flex/lib
CPPFLAGS: -I/usr/local/opt/flex/include

==> Summary 🍺 /usr/local/Cellar/flex/2.5.39: 45 files, 2.0M ==> Downloading https://homebrew.bintray.com/bottles/bison-3.0.4.yosemite.bottle.tar.gz ######################################################################## 100.0% ==> Pouring bison-3.0.4.yosemite.bottle.tar.gz ==> Caveats This formula is keg-only, which means it was not symlinked into /usr/local.

Mac OS X already provides this software and installing another version in parallel can cause all kinds of trouble.

Some formulae require a newer version of bison.

Generally there are no consequences of this for you. If you build your own software and it requires this formula, you'll need to add to your build variables:

LDFLAGS:  -L/usr/local/opt/bison/lib

==> Summary 🍺 /usr/local/Cellar/bison/3.0.4: 51 files, 2.2M ==> Downloading https://homebrew.bintray.com/bottles/mpich2-3.1.4.yosemite.bottle.tar.gz ######################################################################## 100.0% ==> Pouring mpich2-3.1.4.yosemite.bottle.tar.gz 🍺 /usr/local/Cellar/mpich2/3.1.4: 850 files, 16M installing prereqs for avl Warning: gcc-4.9.2_1 already installed installing prereqs for xfoil Warning: gcc-4.9.2_1 already installed installing prereqs for drake java version >= 1.6: YES Error: boost-1.55.0 already installed To install this version, first brew unlink boost' Error: graphviz-2.36.0 already installed To install this version, firstbrew unlink graphviz'