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RoccoDAnt / napari-zelda

ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
BSD 3-Clause "New" or "Revised" License
19 stars 3 forks source link

Fix napari version in dependencies #2

Open haesleinhuepf opened 2 years ago

haesleinhuepf commented 2 years ago

Hi @RoccoDAnt ,

first of all congrats to this cool napari plugin! However, I just had an issue with installing it. My napari-app, which is version 0.4.11 threw an error:

ERROR: Cannot uninstall napari 0.4.11, RECORD file not found. Hint: The package was installed by briefcase.

when trying to install napari-zelda, because of this line: https://github.com/RoccoDAnt/napari-zelda/blob/main/setup.cfg#L33

Is there a specific reason for excluding this napari version?

Thanks!

Best, Robert

Full error log:

Collecting napari-zelda

  Downloading napari-zelda-0.1.4.tar.gz (578 kB)

Requirement already satisfied: magicgui in c:\users\rober\appdata\local\programs\napari\python\lib\site-packages (from napari-zelda) (0.3.2)

Requirement already satisfied: matplotlib in c:\users\rober\appdata\local\programs\napari\app_packages (from napari-zelda) (3.4.3)

Collecting json5

  Using cached json5-0.9.6-py2.py3-none-any.whl (18 kB)

Collecting napari!=0.4.11

  Using cached napari-0.4.12-py3-none-any.whl (2.4 MB)

Requirement already satisfied: napari-plugin-engine>=0.1.4 in c:\users\rober\appdata\local\programs\napari\app_packages (from napari-zelda) (0.1.9)

Requirement already satisfied: numpy in c:\users\rober\appdata\local\programs\napari\app_packages (from napari-zelda) (1.19.3)

Requirement already satisfied: pandas in c:\users\rober\appdata\local\programs\napari\python\lib\site-packages (from napari-zelda) (1.3.0)

Requirement already satisfied: scikit-image in c:\users\rober\appdata\local\programs\napari\app_packages (from napari-zelda) (0.18.3)

Requirement already satisfied: scipy in c:\users\rober\appdata\local\programs\napari\app_packages (from napari-zelda) (1.7.1)

Requirement already satisfied: pyparsing>=2.2.1 in c:\users\rober\appdata\local\programs\napari\app_packages (from matplotlib->napari-zelda) (2.4.7)

Requirement already satisfied: pillow>=6.2.0 in c:\users\rober\appdata\local\programs\napari\app_packages (from matplotlib->napari-zelda) (8.3.2)

Requirement already satisfied: kiwisolver>=1.0.1 in c:\users\rober\appdata\local\programs\napari\app_packages (from matplotlib->napari-zelda) (1.3.2)

Requirement already satisfied: python-dateutil>=2.7 in c:\users\rober\appdata\local\programs\napari\app_packages (from matplotlib->napari-zelda) (2.8.2)
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Requirement already satisfied: attrs>=17.4.0 in c:\users\rober\appdata\local\programs\napari\app_packages (from jsonschema>=3.2.0->napari!=0.4.11->napari-zelda) (21.2.0)

Requirement already satisfied: pyrsistent>=0.14.0 in c:\users\rober\appdata\local\programs\napari\app_packages (from jsonschema>=3.2.0->napari!=0.4.11->napari-zelda) (0.18.0)

Requirement already satisfied: setuptools in c:\users\rober\appdata\local\programs\napari\app_packages (from jsonschema>=3.2.0->napari!=0.4.11->napari-zelda) (57.4.0)

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Requirement already satisfied: IPython>=7.7.0 in c:\users\rober\appdata\local\programs\napari\app_packages (from napari-console>=0.0.4->napari!=0.4.11->napari-zelda) (7.27.0)

Requirement already satisfied: ipykernel>=5.2.0 in c:\users\rober\appdata\local\programs\napari\app_packages (from napari-console>=0.0.4->napari!=0.4.11->napari-zelda) (6.3.1)

Requirement already satisfied: qtconsole!=4.7.6,>=4.5.1 in c:\users\rober\appdata\local\programs\napari\app_packages (from napari-console>=0.0.4->napari!=0.4.11->napari-zelda) (5.1.1)

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Building wheels for collected packages: napari-zelda

  Building wheel for napari-zelda (setup.py): started

  Building wheel for napari-zelda (setup.py): finished with status 'done'

  Created wheel for napari-zelda: filename=napari_zelda-0.1.4-py3-none-any.whl size=12980 sha256=994f9f3254ec17e27c6e7f77e059124b31374069ab67a3c101d9918b46e4826a
  Stored in directory: c:\users\rober\appdata\local\pip\cache\wheels\c2\5b\48\aae9b8bc61633cd204e6785f2c03501189077bd83704a4b73d

Successfully built napari-zelda

Installing collected packages: napari, json5, napari-zelda
  Attempting uninstall: napari

    Found existing installation: napari 0.4.11

ERROR: Cannot uninstall napari 0.4.11, RECORD file not found. Hint: The package was installed by briefcase.

WARNING: You are using pip version 21.2.4; however, version 21.3.1 is available.
You should consider upgrading via the 'C:\Users\rober\AppData\Local\Programs\napari\python\python.exe -m pip install --upgrade pip' command.
RoccoDAnt commented 2 years ago

Hi Robert @haesleinhuepf, thanks for checking it out! I had a few users having issues with that version and errors thrown from QWindow about window geometry. napari 0.4.11 correctly shows the plugin but once closed it won't start again. I tried (with try and catch) to use napari.utils.setting to set the "Save Window Geometry" as False but that line seemed to be ignored by napari 0.4.11, while previous (<=0.4.10) and latest (0.4.12) correctly restart napari with a smaller GUI size and no error/warning seems to show up. My bad for not having further investigated this (asked for help) by opening an issue on napari repository.
I excluded version 0.4.11 as a temporary solution to further progress with the plugin development. Will try to get it working also with 0.4.11 but it will probably require some more time. Thanks!