Roestlab / dia-pasef

Scripts for DIA-Pasef
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scikit-image missing from setup.py #43

Closed singjc closed 1 year ago

singjc commented 1 year ago

scikit-image is not included in setup.py, which on a fresh pip install causes an error if the package is not already installed. Fix by adding scikit-image to setup.py.

Traceback (most recent call last):
  File "/gpfs/fs1/home/h/hroest/singjust/bin/py39/bin/diapysef", line 5, in <module>
    from diapysef.main import cli
  File "/gpfs/fs1/home/h/hroest/singjust/bin/py39/lib/python3.9/site-packages/diapysef/__init__.py", line 4, in <module>
    from .plotting import *
  File "/gpfs/fs1/home/h/hroest/singjust/bin/py39/lib/python3.9/site-packages/diapysef/plotting.py", line 22, in <module>
    from skimage.morphology import disk, binary_dilation
ModuleNotFoundError: No module named 'skimage'