search

Roestlab / dia-pasef

Scripts for DIA-Pasef
5 stars 12 forks source link

Implement non-linear RT alignment #7

Closed hroest closed 5 years ago

hroest commented 6 years ago

Add non-linear RT alignment here:

https://github.com/Roestlab/dia-pasef/blob/ed8e182fd80c9a36c492928ad34ec4e565077ef2/src/diapysef/diapysef/conversions.py#L82-L96

use for example statsmodels lowess (example code https://github.com/msproteomicstools/msproteomicstools/blob/master/msproteomicstoolslib/math/Smoothing.py#L416 )

klannieha commented 6 years ago

Currently testing with https://github.com/Roestlab/dia-pasef/commit/8947800faa8cd2a18898a80f399766cf116af81e

klannieha commented 6 years ago

Lowess alignment worked with https://github.com/Roestlab/dia-pasef/commit/a093563d5e36c5da23cb6698aa6c15495456646d , going to add options for removing outliers and put in gene names