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RogerLab / meow

An extension for MAMMaL that uses Entropy and includes low partitions
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`-sh` and `-sl` is not working well #6

Closed HRD-Ryo closed 1 week ago

HRD-Ryo commented 1 week ago

The file specified with -sh is used for both of high and low clustering. I attached test_1.phy.txt which is subalignment of test.phy.

$ meow -sh test_1.phy.txt -sl test.phy -ch 40 -cl 20 -t test.phy.tree 
Running MEOW with the following parameters:
 High partition sequence file: test_1.phy.txt
Low partition sequence file: test.phy 

 Tree file:  test.phy.tree 
 Output file:  esmodel.nex (Total number of classes: 60) 
 Partition mode:   Entropy  
 High partition classes:  40    Low partition classes:  20 
 Quantile:  0.75    Cluster type:  hclust   Penalty:  1e-10 

HIGH PARTITION -- Number of sequences: 40 ; Number of sites: 21506
LOW PARTITION -- Number of sequences: 40 ; Number of sites: 21506
Calculating likelihood weights...
Processing data...
Generating output...
Done

test_1.phy.txt

HectorBanos commented 1 week ago

This issue has been fixed