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Roleren / ORFik

MIT License
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Feature request: fastp - base correction option #172

Open SuhasSrinivasan opened 6 months ago

SuhasSrinivasan commented 6 months ago

Hi,

Hope you are having good week!

When using paired-end data, it would be very helpful to enable fastp option to correct bases with overlapping reads.

https://github.com/OpenGene/fastp?tab=readme-ov-file#base-correction-for-pe-data

Currently this parameter is not present in STAR.align.folder().

R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.4 LTS
ORFik_1.22.2