-> Done reading data waiting for calculations to finish
-> Done waiting for threads
-> Output filenames:
->"../../results/pcangsd/angsd.arg"
->"../../results/pcangsd/angsd.beagle.gz"
->"../../results/pcangsd/angsd.mafs.gz"
-> Thu Jan 28 15:32:32 2021
-> Arguments and parameters for all analysis are located in .arg file
-> Total number of sites analyzed: 420397048
-> Number of sites retained after filtering: 731123
[ALL done] cpu-time used = 91009.46 sec
[ALL done] walltime used = 14428.00 sec
I downloaded and compiled pcangsd yesterday. It's not really clear to me what I've done that could screw up the beagle file, so any help would be appreciated!
Hello,
I was wondering if you could give me some insight into this error I'm getting:
I run angsd like this (angsd version: 0.933-102-g7d57642):
angsd finishes without error:
And I run pcangsd like this:
And the error, after only a few seconds:
If I look at the beagle.gz file it seems ok.
I downloaded and compiled pcangsd yesterday. It's not really clear to me what I've done that could screw up the beagle file, so any help would be appreciated!
Noah