Traceback (most recent call last):
File "pcangsd.py", line 177, in <module>
G = np.fromfile(bed, dtype=np.uint8, offset=3)
TypeError: 'offset' is an invalid keyword argument for fromfile()
One thing that's different from normal is my PLINK file was generated from a VCF file (following GATK SNP calling) instead of a genotype likelihood file generated from ANGSD.
I have 115 samples and 11,910,929 SNPs in my dataset.
Can you help me understand why am I getting this error and how to solve it?
Hi, I am trying to run PCAngsd v.1.01 to get the inbreeding coefficients and create a neighbor joining tree. My code is:
And I am getting an error:
One thing that's different from normal is my PLINK file was generated from a VCF file (following GATK SNP calling) instead of a genotype likelihood file generated from ANGSD. I have 115 samples and 11,910,929 SNPs in my dataset.
Can you help me understand why am I getting this error and how to solve it?
Thanks, Samarth