Open fgvieira opened 2 years ago
Dear all,
are there any plans to support VCF input? It would be nice if it would support genotypes, and both the GL and PL likelihoods.
Not sure if it might help, but with bcftools it is possible to convert a VCF to "almost" a beagle format:
bcftools
bcftools query --format "%CHROM\t%POS\t%REF\t%ALT[\t%GL]\n"
Maybe this format would be easier to read internally? thanks,
Dear all,
are there any plans to support VCF input? It would be nice if it would support genotypes, and both the GL and PL likelihoods.
Not sure if it might help, but with
bcftools
it is possible to convert a VCF to "almost" a beagle format:Maybe this format would be easier to read internally? thanks,