Closed shyama-mama closed 3 months ago
Hi guys,
I am using the v1.2 release of pcangsd. The log file indicates 7388691 sites loaded out of 8815455
Number of sites after MAF filtering (0.05): 7388691
The command was run as follows:
pcangsd -b ${BEAGLE} -e 2 -t 64 -o ${OUTPUT} --selection --admix --sites_save --filter ${FILE}
However, the sites_save output looks like this
sort ${SITES_SAVE} | uniq -c 8815455 0
Do you know what could be happening here?
Thanks, Shyam
Nvm it was fixed using the latest version v1.21 built from the master branch. Thanks I'll close this ticket now.
Hi guys,
I am using the v1.2 release of pcangsd. The log file indicates 7388691 sites loaded out of 8815455
The command was run as follows:
However, the sites_save output looks like this
Do you know what could be happening here?
Thanks, Shyam