inpaint cache problem

[guyujun]

Hi!

i try to run RFDesign in colab, but i meet some trouble:

in the readme: "If you are getting output pdbs that are a ball of disconnected segments (as viewed in pymol), this may be due to a problem with the spherical harmonics cached by SE3-transformer. A workaround is to copy the hallucination/cache/ folder (a correct, clean copy of the cache) to your working directory before running hallucinate.py or inpaint.py."

it did not help when running inpaint.py, the output pdb still adisconnected ball.

what i already done:

• cp -r hallucination/cache ./

by the way, in the se3.yml the icecream is missing.

best, weikun

[guyujun]

running hallucination.py, if i remove the cache, the program will create 0.pkl.gz etc automatic. but it wont for inpaint

[jueseph]

Try copying the cache/ folder to rfdesign/inpainting/model/equivariant_attention/from_se3cnn/

It's a little mysterious where SE3 transformer decides to put/read its cache. Sometimes it's in the current working directory, sometimes it's in the directory of the library.

On Sat, Jan 15, 2022 at 9:03 AM guyu @.***> wrote:

running hallucination.py, if i remove the cache, the program will create 0.pkl.gz etc automatic. but it wont for inpaint

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[guyujun]

Try copying the cache/ folder to rfdesign/inpainting/model/equivariant_attention/from_se3cnn/ It's a little mysterious where SE3 transformer decides to put/read its cache. Sometimes it's in the current working directory, sometimes it's in the directory of the library. … On Sat, Jan 15, 2022 at 9:03 AM guyu @.> wrote: running hallucination.py, if i remove the cache, the program will create 0.pkl.gz etc automatic. but it wont for inpaint — Reply to this email directly, view it on GitHub <#1 (comment)>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABCU532E2WOHC3XBAHZJHTUWGSGHANCNFSM5MBFVN2Q . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub. You are receiving this because you are subscribed to this thread.Message ID: @.>

thanks，it works now！