jueseph
commented
1 year ago the weights file is separate. see full instructions in the readme: https://github.com/RosettaCommons/RFDesign
On Thu, Mar 16, 2023 at 8:25 PM Jonathan Ash @.***> wrote:
Command: python hallucinate.py --pdb=../test/input/4e3b.pdb --mask="A30-40" --out=../test/output/ Output: FileNotFoundError: Traceback (most recent call last): File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign/hallucination/hallucinate.py", line 739, in main() File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign/hallucination/hallucinate.py", line 273, in main Net, net_params = optimization.load_structure_predictor(script_dir, args, device) File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign/hallucination/util/../optimization.py", line 297, in load_structure_predictor weights = torch.load(chks[0],map_location=torch.device(device)) File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign_env/SE3-nvidia/lib/python3.9/site-packages/torch/serialization.py", line 594, in load with _open_file_like(f, 'rb') as opened_file: File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign_env/SE3-nvidia/lib/python3.9/site-packages/torch/serialization.py", line 230, in _open_file_like return _open_file(name_or_buffer, mode) File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign_env/SE3-nvidia/lib/python3.9/site-packages/torch/serialization.py", line 211, in init super(_open_file, self).init(open(name, mode)) [Errno 2] No such file or directory: '/projectsp/f_sdk94_1/PDZ_complex/RFDesign/hallucination/weights//rf_Nov05/BFF_last.pt'
The weights file BFF_last.pt, which is listed under checkpoints in models.json, does not exist. Is there something I did wrong in my command? Or should this weights file be obtained elsewhere?
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JonathanEAsh
Command: python hallucinate.py --pdb=../test/input/4e3b.pdb --mask="A30-40" --out=../test/output/ Output: FileNotFoundError: Traceback (most recent call last): File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign/hallucination/hallucinate.py", line 739, in
main()
File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign/hallucination/hallucinate.py", line 273, in main
Net, net_params = optimization.load_structure_predictor(script_dir, args, device)
File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign/hallucination/util/../optimization.py", line 297, in load_structure_predictor
weights = torch.load(chks[0],map_location=torch.device(device))
File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign_env/SE3-nvidia/lib/python3.9/site-packages/torch/serialization.py", line 594, in load
with _open_file_like(f, 'rb') as opened_file:
File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign_env/SE3-nvidia/lib/python3.9/site-packages/torch/serialization.py", line 230, in _open_file_like
return _open_file(name_or_buffer, mode)
File "/projectsp/f_sdk94_1/PDZ_complex/RFDesign_env/SE3-nvidia/lib/python3.9/site-packages/torch/serialization.py", line 211, in init
super(_open_file, self).init(open(name, mode))
[Errno 2] No such file or directory: '/projectsp/f_sdk94_1/PDZ_complex/RFDesign/hallucination/weights//rf_Nov05/BFF_last.pt'
The weights file BFF_last.pt, which is listed under checkpoints in models.json, does not exist. Is there something I did wrong in my command? Or should this weights file be obtained elsewhere?