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RosettaCommons / RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold
MIT License
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Run hhsearch have not "t000_.atab" #64

Open Meowooo opened 3 years ago

Meowooo commented 3 years ago

detail: Using backend: pytorch Traceback (most recent call last): File "/data1/home/RoseTTAFold-main/network/predict_e2e.py", line 324, in pred.predict(args.a3m_fn, args.out_prefix, args.hhr, args.atab) File "/data1/home/RoseTTAFold-main/network/predict_e2e.py", line 120, in predict xyz_t, t1d, t0d = read_templates(L, ffdb, hhr_fn, atab_fn, n_templ=10) File "/data1/home/RoseTTAFold-main/network/parsers.py", line 241, in read_templates xyz_t, qmap, t0d, t1d, ids = parse_templates(ffdb, hhr_fn, atab_fn) File "/data1/home/RoseTTAFold-main/network/parsers.py", line 180, in parsetemplates for l in open(infile, "r").readlines(): FileNotFoundError: [Errno 2] No such file or directory: '/data1/home/RoseTTAFold-main/example/t000.atab'

what should I do?

minkbaek commented 3 years ago

which hhsuite version are you using? could you give me more details?

zliu36 commented 2 years ago

when I use the example and run run_pyrosetta_ver.sh, this code can create t000_.ss2 ,t000_.msa0.a3m, and t000_.msa0.ss2.a3m, but it can't create t000_.atab so,I can't run third of this shell.