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RosettaCommons / protein_generator

Joint sequence and structure generation with RoseTTAFold sequence space diffusion
https://huggingface.co/spaces/merle/PROTEIN_GENERATOR
MIT License
211 stars 31 forks source link

No logic for structure diffusion #12

Open jsrimr opened 1 year ago

jsrimr commented 1 year ago

Following inference.py code, I come to doubt if there exist code for structure diffusion.

Is this intended or I'm just missing something?

Any advice would help a lot!

0merle0 commented 12 months ago

There is no diffusion in str space happening here, only in sequence space

jsrimr commented 12 months ago

Sad to hear that. Do you have any plan to integrate structure space diffusion as described in the paper?

0merle0 commented 12 months ago

Maybe there's a misunderstanding here? Where do you see diffusion in structure space in the text?

jsrimr commented 12 months ago

As the title of the paper is 'Joint Generation of Protein Sequence and Structure', I thought it's d be natural to diffuse both sequence and structure. Maybe I'm getting something wrong.. Should the structure be fixed?